| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6063028 | 33 (1.040) | 3 (0.100) | 3/238 | NT | 8.7% | intergenic (‑85/‑140) | rubA/ubiC | rubredoxin‑1/chorismate pyruvate‑lyase |
| ? | NC_002947 | = 6063060 | 31 (1.020) | intergenic (‑117/‑108) | rubA/ubiC | rubredoxin‑1/chorismate pyruvate‑lyase | |||||
CCTTCGGCTTCGTCGTAGATCAGGCCACAGACAATACATTGCCACTTTTTCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGCCCTGCCGCCAGTATGCAAGCAGTTGGGGCAATCATGCTAAGCTCGCCGCCTCTCTGGCTGTAACAAAGCATACCGACGTGTCGTACG > NC_002947/6062891‑6063177 | ccTTCGGCTTCGTCGTAGATCAGGCCACAGACAATACATTGCCACTTTTTCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCggg < 1:522319/150‑1 (MQ=255) ttCGGCTTCGTCGTAGATCAGGCCACAGACAATACATTGCCCCTTTTTCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCt > 1:96729/1‑150 (MQ=255) ttCGGCTTCGTCGTAGATCAGGCCACAGACAATACATTGCCACTTTTTCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCt > 1:38944/1‑150 (MQ=255) tCGGCTTCGTCGTAGATCAGGCCACAGACAATACATTGCCACTTTTTCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCtt < 1:736746/150‑1 (MQ=255) cAGGCCACAGACAATACATTGCCACTTTTTCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCa < 2:376919/150‑1 (MQ=255) aGGCCACAGACAATACATTGCCACTTTTTCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAg < 2:592688‑M2/150‑2 (MQ=255) gCCACAGACAATACATTGCCACTTTTTCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAgcg < 2:596817‑M2/150‑4 (MQ=255) actttgtcACTGGTTCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCtggccctgtgcgcgggcaagcccgccaggcctgcgcggtcactgtag < 2:607088‑M1/147‑48 (MQ=255) aCATTGCCACTTTTTCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTgg < 1:342698/150‑1 (MQ=255) ccACTTTTTCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCtt < 2:565046/150‑1 (MQ=255) ttttCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAg < 1:401326/150‑1 (MQ=255) ttCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCg < 2:264150/150‑1 (MQ=255) tcatcaGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCgg < 1:245031/150‑1 (MQ=255) ttaGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGccc > 1:28325/3‑150 (MQ=255) tttCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCtggccctgtgcgcgggcaagcccgccaggcctgcgc > 1:338668‑M1/1‑77 (MQ=255) tttCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCtggccctgtgcgcgggcaagcccgccaggcctgcgc < 2:338668‑M1/113‑37 (MQ=255) tttCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAgcgc < 1:302816‑M2/113‑5 (MQ=255) tttCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAgcgc > 2:302816‑M2/1‑109 (MQ=255) tCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGCCCTGCCGCCAGTATGc > 1:227261/1‑150 (MQ=255) ggTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGCCCTGCCGCCAGTATGCaa < 2:28325/150‑1 (MQ=255) ggCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGCCCTGCCGCCAGTATGCAAGCAGtt < 2:830709/150‑1 (MQ=255) cTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGCCCTGCCGCCAGTATGCAAGCAGTTgg < 2:227261/150‑1 (MQ=255) tGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGCCCTGCCGCCAGTATGCAAGCAGTTggg < 2:773206/150‑1 (MQ=255) ggggCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGCCCTGCCGCCAGTATGCAAGCAGTTgggg < 1:592688/150‑1 (MQ=255) gCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGc < 1:558381/119‑1 (MQ=255) gCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGc > 2:558381/1‑119 (MQ=255) cTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGCCCTGCCGCCAGTATGCAAGCAGTTGGGGCAAt < 1:596817/150‑1 (MQ=255) gtTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGACTTGCCCACCCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGCCCTGCCGCCAGTATGCAAGCAGTTGGGGCAATCATGc > 2:418889/1‑150 (MQ=255) gctgctGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGCCCTGCCGCCAGTa > 2:657237/1‑123 (MQ=255) gctgctGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGACTGGCGGGCTTGCCCGCGCACATGGCCAGCGCTCAATGCGTGGGGGCTTTGTAGCGGCCCTGCCGCCAGTa < 1:657237/123‑1 (MQ=255) tgctgATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGCCCTGCCGCCAGTATGCAAGCAGTTGGGGCAATCATGCTAAGc > 1:838719/1‑150 (MQ=255) tgATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGCCCTGCCGCCAGTATGCAAGCAGTTgggg > 2:629135/1‑133 (MQ=255) tgATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGCCCTGCCGCCAGTATGCAAGCAGTTgggg < 1:629135/133‑1 (MQ=255) gCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGCCCTGCCGCCAGTATGCAAGCAGTTGGGGCAATCAGGCTAAGCTCgccgcc > 2:594906/1‑150 (MQ=255) ctctTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGCCCTGCCGCCAGTATGCAAGCAGTTGGGGCAATCATGCTAAGCTCGCCGCctc > 2:568052/1‑150 (MQ=255) aaGCCGCTCCTACAGTGACCGCGCAGGCCTGGCTGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGCCCTGCCGCCAGTATGCAAGCAGTTGGGGCAATCATGCTAAGCTCGCCGCCTCTCTGGCTGTAAc > 2:508227/1‑150 (MQ=255) cTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAgcgcggtcactgtaggagcggcttgcccgcgaagaggccatcagcagcaacacaagccccagcctgaaccgaggaaatagacctgatgaaccagtgacaaagt < 2:607088‑M2/150‑104 (MQ=255) tACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGCCCTGCCGCCAGTATGCAAGCAGTTGGGGCAATCATGCTAAGCTCGCCGCCTCTCTGGCTGTAACAAAGCATAcc < 1:568052/150‑1 (MQ=255) aCAGTGACCGCGCAGGCAACGCGCGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGCCCTGCCGCCAGTATGCAAGCAGTTGGGGCAATCATGCTAAGCTCGCCGCCTCTCTGGCTGTAACAAAGCATACCg > 2:438411/1‑150 (MQ=255) ccGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGCCCTGCCGCCAGTATGCAAGCAGTTGGGGCAATCATGCTAAGCTcgccgc > 2:443364/1‑117 (MQ=255) ccGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGCCCTGCCGCCAGTATGCAAGCAGTTGGGGCAATCATGCTAAGCTcgccgc < 1:443364/117‑1 (MQ=255) gcgctggccctgtgcgcgggcaagcccgccaggcctgcgcggtcactgtaggagcggcttgcccgcgaagaggccatcagcagcaacacaagccccagcctgaaccgaggaaa < 1:302816‑M1/113‑110 (MQ=255) gcgctggccctgtgcgcgggcaagcccgccaggcctgcgcggtcactgtaggagcggcttgcccgcgaagaggccatcagcagcaacacaagccccagcctgaaccgaggaaa > 2:302816‑M1/1‑4 (MQ=255) gcgcAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAgcgcggtcactgtaggagcggcttgcccgcgaagaggccatcagcagcaacacaagccccagcctgaaccgaggaaa > 1:338668‑M2/1‑36 (MQ=255) gcgcAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAgcgcggtcactgtaggagcggcttgcccgcgaagaggccatcagcagcaacacaagccccagcctgaaccgaggaaa < 2:338668‑M2/113‑78 (MQ=255) cgctggccctgtgcgcgggcaagcccgccaggcctgcgcggtcactgtaggagcggcttgcccgcgaagaggccatcagcagcaacacaagccccagcctgaaccgaggaaatagacctgatgaaaaagtggcaatgtattgtctgtggc < 2:596817‑M1/150‑148 (MQ=255) ctggccctgtgcgcgggcaagcccgccaggcctgcgcggtcactgtaggagcggcttgcccgcgaagaggccatcagcagcaacacaagccccagcctgaaccgaggaaatagacctgatgaaaaagtggcaatgtattgtctgtggcct < 2:592688‑M1/150‑150 (MQ=255) | CCTTCGGCTTCGTCGTAGATCAGGCCACAGACAATACATTGCCACTTTTTCATCAGGTCTATTTCCTCGGTTCAGGCTGGGGCTTGTGTTGCTGCTGATGGCCTCTTCGCGGGCAAGCCGCTCCTACAGTGACCGCGCAGGCCTGGCGGGCTTGCCCGCGCACAGGGCCAGCGCGCAATGCGTGGGGGCTTTGTAGCGGCCCTGCCGCCAGTATGCAAGCAGTTGGGGCAATCATGCTAAGCTCGCCGCCTCTCTGGCTGTAACAAAGCATACCGACGTGTCGTACG > NC_002947/6062891‑6063177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |