| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 203745 | 18 (0.570) | 15 (0.490) | 6/238 | NT | 46.5% | coding (9251/26049 nt) | PP_0168 | putative surface adhesion protein |
| ? | NC_002947 | = 207772 | NA (NA) | coding (13278/26049 nt) | PP_0168 | putative surface adhesion protein | |||||
CGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTC > NC_002947/203596‑203893 | cGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCC < 1:508198‑M1/150‑1 (MQ=255) gTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCg > 2:160865/1‑150 (MQ=255) cAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACTCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCaa > 2:226986/1‑150 (MQ=255) ccGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCgttggccggcacgg < 1:706604‑M1/150‑15 (MQ=255) gCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCAAGTCCCCGAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCgttggccggcacggtg < 1:692356‑M1/150‑17 (MQ=255) ccACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTgg < 1:519694/150‑1 (MQ=37) gacCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCgttggccggcacggtgat < 1:695566‑M1/149‑19 (MQ=255) ctccGTCGGTCACCGAAGGCGGCGAGATCACTCACACCATCACCCTAACCAACAAAGATGGTCTGCCCATGAACAACCACAGGGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCa < 2:183553/148‑1 (MQ=11) ccccGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACTCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCa < 1:226986/150‑1 (MQ=17) cGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTg < 1:474611/150‑1 (MQ=35) tCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCg > 2:725699/1‑150 (MQ=39) cACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGt < 1:63625/150‑1 (MQ=39) aCCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTg > 1:150622/1‑150 (MQ=39) aCCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTg > 2:850329/1‑150 (MQ=38) ccGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGa < 2:572660/150‑1 (MQ=40) gAAGGCGGCGAGATCACCTACACCATCACCCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAGACCGTCATCACCGTGCCgttggccggcacggtgatgacggtcttgcc > 1:182555‑M1/1‑116 (MQ=255) gAAGGCGGCGAGATCACCTACACCATCACCCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAGACCGTCATCACCGTGCCgttggccggcacggtgatgacggtcttgcc < 2:182555‑M1/146‑31 (MQ=255) gaTCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACaa < 2:150622/150‑1 (MQ=255) ccATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCg < 1:160865/150‑1 (MQ=39) cATCACCCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGTGACGGCAAAACCGTCATCACGGTGCCgttggccggcacggtgatgacgg < 1:118977‑M1/116‑24 (MQ=255) cATCACCCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGTGACGGCAAAACCGTCATCACGGTGCCgttggccggcacggtgatgacgg > 2:118977‑M1/1‑93 (MQ=255) cATCACCCTGAACAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGGCGGCAAAACCGTCATAACCGTGACGACCAACGGCACCGTGGGCACTGCAACCGTGACTACCCCGGACAACGTCTACGTCgg > 2:145840/1‑150 (MQ=11) aCCCTGCCCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTAcc < 2:647220/150‑1 (MQ=37) ccAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACAGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCACGGACAACGTCTACGTCGGTACCAACGAcc > 2:306681/1‑150 (MQ=255) caacaaAGACGGTCTGCCAATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACGGTGCCgttggccggcacggtga < 1:287849‑M1/98‑18 (MQ=255) caacaaAGACGGTCTGCCAATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACGGTGCCgttggccggcacggtga > 2:287849‑M1/1‑81 (MQ=255) aacaaAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCACCCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCt < 1:410853/150‑1 (MQ=37) aacaaAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACCCTGAGCGACGGCAAAACCGTCATCACCGTGCCattagccggcacggtga < 2:748831‑M1/97‑18 (MQ=255) aacaaAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACCCTGAGCGACGGCAAAACCGTCATCACCGTGCCattagccggcacggtga > 1:748831‑M1/1‑80 (MQ=255) gTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAat < 1:725699/150‑1 (MQ=34) gATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCattagccggcacggtga > 2:300233‑M1/1‑63 (MQ=255) gATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCattagccggcacggtga < 1:300233‑M1/80‑18 (MQ=255) aacaacCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCattagccggcacggtgatga < 1:724790‑M1/79‑21 (MQ=255) aacaacCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCattagccggcacggtgatga > 2:724790‑M1/1‑59 (MQ=255) aacaacCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAAcc > 2:322926/1‑150 (MQ=32) tGCCattagccggcacggtgatgacggttttgccgtcgctcagcgtgaaggtcaatgcactgtggttgttgatcggcaggccgtctttgttggtcagggtgatggtgtaagtgatctcgccaccttcggtgaccgaaggggtcgcggtca > 2:665695‑M1/1‑4 (MQ=255) tGCCattagccggcacggtgatgacggttttgccgtcgctcagcgtgaaggtcaatgcactgtggttgttgatcggcaggccgtctttgttggtcagggtgatggtgtaagtgatctcgccaccttcggtgaccgaaggggtcgcggtca < 1:514607‑M1/150‑147 (MQ=255) gCCattagccggcacggtgatgacggttttgccgtcgctcagcgtgaaggtcaatgcactgtggttgttgatcggcaggccgtctttgt > 2:287250‑M1/1‑3 (MQ=255) gCCattagccggcacggtgatgacggttttgccgtcgctcagcgtgaaggtcaatgcactgtggttgttgatcggcaggccgtctttgt < 1:287250‑M1/89‑87 (MQ=255) ccattagccggcacggtgatgacggttttgccgtcgctcagcgtgaaggtcaatgcactggggttgttgatcggcaggccgtctttgttggtcagggtgatggtgtaagtgatctcgccaccttcggtgaccgaaggggtcgcggtcagc > 1:74338‑M1/1‑2 (MQ=255) | CGTGGCCAAGTTGACCGCCACCCCGTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGATGGTCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCCAACGGCACCGTGGGCACTGCAACCGTGACTGCCCCGGACAACGTCTACGTCGGTACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGACGTCGGTAAGTTCGAGCAACTGACGCTGGACAAGACGCCGGTC > NC_002947/203596‑203893 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |