New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	254680 =	32 (1.010)	8 (0.270)	7/236	NT	22.1%	coding (437/1731 nt)	PP_0203	dipeptidase
	?	NC_002947	254712 =	26 (0.860)					coding (405/1731 nt)	PP_0203	dipeptidase

TGACCTTGAACGGGTCCAGGCGCGTACCGTCGGCCAGCTTCCAGTTGTCCGGGTTGACCGGCACGACGTCAGCGTGGGCATGGATGCCGATCACTTCCTTCCCGCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAGGAATTCAGGGTTTTCGTACTGCGGCGTACCCTCGACATTGAAGGTGGGGATGGCTACCAGTTCGCGCAGGGTTTCGGTAGCGGCTTTGCCATACTTG  >  NC_002947/254534‑254829                                                                                                                                                   |                                                                                                                                                       accgcctgctcggcctgtatacccgcatcaagtatggcaaagccgctaccgaaaccctgcgcgaactggtagccatccccaccttcaatgtcgagggtacgccgcagtacgaaaaccctgaattcctcaagatcgccgacaagatcAagg                                                                                                                                                     >  2:843148‑M1/147‑150 (MQ=255)  ccgcctgctcggcctgtatacccgcatcaagtatggcaaagccgctaccgaaaccctgcgcgaactggtagccatccccaccttcaatgccgagggtacgccgcagtacgaaaaccctgaattcctcaagatcgccgacaagatcAaggc                                                                                                                                                    <  1:189005‑M1/5‑1 (MQ=255)     cTTGAACGGGTCCAGGCGCGTACCGTCGGCCAGCTTCCAGTTGTCCGGGTTGACCGGCACGACGTCAGCGTGGGCATGGATGCCGATCACTTCCTTCCCGCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAaggcca‑g                                                                                                                                                >  2:627773/1‑150 (MQ=255)       tGAACGGGTCCAGGCGCGTACCGTCGGCCAGCTTCCAGTTGTCCGGGTTGACCGGCACGACGTCAGCGTGGGCATGGATGCCGATCACTTCCTTCCCGCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAaggcca‑ggc                                                                                                                                              <  2:832115/150‑1 (MQ=255)       tGAACGGGTCCAGGCGCGTACCGTCGGCCAGCTTCCAGTTGTCCGGGTTGACCGGCACGACGTCAGCGTGGGAATGGATGCCGATCACTTCCTTCCCGCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAaggcca‑ggc                                                                                                                                              <  1:660726/150‑1 (MQ=255)              cctgtatacccgcatcaagtatggcaaagccgctaccgaaaccctgcgcgaactggtagccatccccaccttcaatgtcgagggtacgccgcagtacgaaaaccctgaattcctcaagatcgccgacaagatcAAGGCCA‑GGCCGAAGCg                                                                                                                                       <  1:646051‑M1/17‑1 (MQ=255)                ccAGGCGCGTACCGTCGGCCAGCTTCCAGTTGTCCGGGTTGACCGGCACGACGTCAGCGTGGGCATGGATGCCGATCACTTCCTTCCCGCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGt                                                                                                                                     <  2:301031/150‑1 (MQ=255)                 cAGGCGCGTACCGTCGGCCAGCTTCCAGTTGTCCGGGTTGACCGGCACGACGTCAGCGTGGGCATGGATGCCGATCACTTCCTTCCCGCTGCACAGTGAGATCTCGTACACCCGGTTGTCGATGTTCCGGACGGACA‑GGCCCAAGCGGTc                                                                                                                                    <  2:33402/150‑1 (MQ=255)                         tACCGTCGGCCAGCTTCCAGTTGTCCGGGTTGACCGGCACGACGTCAGCGTGGGCATGGATGCCGATCACTTCCTTCCCGCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAgg                                                                                                                            >  1:695938/1‑150 (MQ=255)                         gcatcaagtatggcaaagccgctaccgaaaccctgcgcgaactggtagccatccccaccttcaatgtcgcgggtatgacgcagtacgaaaacccgcaattcctcaagatcgccgacaagatcAAGGCCTTGGCCGAAGCGGTCGGCCAAg                                                                                                                             >  1:744364‑M1/123‑150 (MQ=255)                           atcaagtatggcaaagccgctaccgaaaccctgcgcgaactggtagccatccccaccttcaatgtcgagggtacgccgcagtacgaaaaccctgaattcctcaagatcgccgacaagatcAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGcc                                                                                                                          >  2:115310‑M1/121‑150 (MQ=255)                             caagtatggcaaagccgctaccgaaaccctgcgcgaactggtagccatccccaccttcaatgtcgagggtacgccgcagtacgaaaaccctgaattcctcaagatcgccgacaagatcAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCtt                                                                                                                        >  2:646051‑M1/119‑150 (MQ=255)                                            gTTGTCCGGGTTGACCGGCACGACGTCAGCGTGGGCATGGATGCCGATCACTTCCTTCCCGCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGAt                                                                                                         >  1:801934/1‑150 (MQ=255)                                                  cgaaaccctgcgcgaactggtagccatccccaccttcaatgtcgagggtacgccgcagtacgaaaaccctgaattcctcaagatcgccgacaagatcAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTg                                                                                                                       <  1:324920‑M1/33‑1 (MQ=255)                                                  cgaaaccctgcgcgaactggtagccatccccaccttcaatgtcgagggtacgccgcagtacgaaaaccctgaattcctcaagatcgccgacaagatcAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTg                                                                                                                       >  2:324920‑M1/98‑130 (MQ=255)                                                  cGGGTTGACCGGCACGACGTCAGCGTGGGCATGGATGCCGATCACTTCCTTCCCGCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAg                                                                                                   <  1:801951/150‑1 (MQ=255)                                                      ttGACCGGCACGACGTCAGCGTGGGCATGGATGCCGATCACTTCCTTCCCGCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAGGAAt                                                                                               >  1:687714/1‑150 (MQ=255)                                                         aCCGGCACGACGTCAGCGTGGGCATGGACGCCGATCACTTCCTTCCCGCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAGGAATTCa                                                                                            <  1:627773/150‑1 (MQ=255)                                                          ccGGCACGACGTCAGCGTGGGCATGGATGCCGATCACTTCCTTCCCGCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAGGAATTCAg                                                                                           >  1:445750/1‑150 (MQ=255)                                                           cGGCACGACGTCAGCGTGGGCATGGATGCCGATCACTTCCTTCCCGCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGcc                                                                                                                                <  2:429603/112‑1 (MQ=255)                                                           cGGCACGACGTCAGCGTGGGCATGGATGCCGATCACTTCCTTCCCGCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGcc                                                                                                                                >  1:429603/1‑112 (MQ=255)                                                             gCACGACGTCAGCGTGGGCATGGATGCCGATCACTTCCTTCCCGCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAGGAATTCAGGGt                                                                                        >  1:703744/1‑150 (MQ=255)                                                             gCACGACGTCAGCGTGGGCATGGATGCCGATCACTTCCTTCCCGCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAGGAATTCAGGGt                                                                                        >  1:786473/1‑150 (MQ=255)                                                                           tccgCATGGATGCCGCTCACTTCCTTCCCGCTGCCCACTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCACCGATCTTTACGAATTCAGGGTTTTCGTACTgcggc                                                                          <  1:415520/147‑1 (MQ=255)                                                                                      gCCGATCACTTCCTTCCCGCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAGGAATTCAGGGTTTTCGTACTGCGGCGTACCCTCGAc                                                               >  2:245364/1‑150 (MQ=255)                                                                                           tCACTTCCTTCCCGCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAGGAATTCAGGGTTTTCGTACTGCGGCGTACCCTCGACATTGa                                                          >  1:291208/1‑150 (MQ=255)                                                                                                 ccttccCGCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAGGAATTCAGGGTTTTCGTACTGCGGCGTACCCTCGACATTGAAGGTgg                                                    <  2:786473/150‑1 (MQ=255)                                                                                                  cttccCGCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAGGAATTCAGGGTTTTCGTACTGCGGCGTACCCTCGACATTGAAGGTggg                                                   <  1:245364/150‑1 (MQ=255)                                                                                                       cGCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAGGAATTNAGGGTTNTCGTACTGCGGCNTACCCTCGACATTGAAGGTGGGGATgg                                              <  1:759896/150‑1 (MQ=255)                                                                                                       cGCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAGGAATTCAGGGTTTTCGTACTGCGGCGTACCCTCGACATTGAAGGTGGGGATgg                                              <  2:445750/150‑1 (MQ=255)                                                                                                        gcagtacgaaaaccctgaattcctcaagatcgccgacaagatcAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCtt                                                                                                                        >  1:540630‑M1/44‑75 (MQ=255)                                                                                                        gcagtacgaaaaccctgaattcctcaagatcgccgacaagatcAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCtt                                                                                                                        <  2:540630‑M1/32‑1 (MQ=255)                                                                                                        gCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAATGCCG‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAGGAATTCAGGGTTTTCGTACTGCGGCGTACCCTCGACATTGAAGGTGGGGATGGc                                             >  2:759896/1‑150 (MQ=255)                                                                                                        gCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAGGAATTCAGGGTTTTCGTACTGCGGCGTACCCTCGACATTGAAGGTGGGGATGGc                                             >  1:714522/1‑150 (MQ=255)                                                                                                             ccAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAGGAATTCAGGGTTTTCGTACTGCGGCGTACCCTCGACATTGAAGGTGGGGATGGCTACCa                                        <  2:695938/150‑1 (MQ=255)                                                                                                             ccAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAGGAATTCAGGGTTTTCGTACTGCGGCGTACCCTCGACATTGAAGGTGGGGATGGCTACCa                                        <  1:196633/150‑1 (MQ=255)                                                                                                               aGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGAGATCTTGAGGAATTCAGGGTTTTCGTACTGCGGCGTACCCTCGCCATTGAAAGTGGGGATGGCTACTAgg                                      >  2:162840/1‑149 (MQ=255)                                                                                                                      tctcGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAGGAATTCAGGGTTTTCGTACTGCGGCGTACCCTCGACATTGAAGGTGGGGATGGCTACCAGTTCGCGCa                               >  2:498394/1‑150 (MQ=255)                                                                                                                       ctcGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAGGAATTCAGGGTTTTCGTACTGCGGCGTACCCTCGACATTGAAGGTGGGGATGGCTACCAGTTCGCGCAg                              <  2:801934/150‑1 (MQ=255)                                                                                                                              acCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAGGAATTCAGGGTTTTCGTACTGCGGCGTACCCTCGACATTGAAGGTGGGGATGGCTACCAGTTCGCGCAGGGTTTCg                       >  2:697923/1‑150 (MQ=255)                                                                                                                                 cGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAGGAATTCAGGGTTTTCGTACTGCGGCGTACCCTCGACATTGAAGGTGGGGATGGCTACCAGTTCGCGCAGGGTTTCGGTa                    <  2:714522/150‑1 (MQ=255)                                                                                                                                         gATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAGGAATTCAGGGTTTTCGTACTGCGGCGTACCCTCGACATTGAAGGTGGGGATGGCTACCAGTTCGCGCAGGGTTTCGGTAGCGGCttt            >  1:47712/1‑150 (MQ=255)                                                                                                                                                   AAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAGGAATTCAGGGTTTTCGTACTGCGGCGTACCCTCGACATTGAAGGTGGGGATGGCTACCAGTTCGCGCAGGGTTTCGGTAGCGGCTTTGCCATACTTg  <  1:772514‑M1/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                       TGACCTTGAACGGGTCCAGGCGCGTACCGTCGGCCAGCTTCCAGTTGTCCGGGTTGACCGGCACGACGTCAGCGTGGGCATGGATGCCGATCACTTCCTTCCCGCTGCCCAGTGAGATCTCGTACACCCGGTTGTCGATGTTGCGGAAGGCCA‑GGCCGAAGCGGTCGGCCAAGGCCTTGATCTTGTCGGCGATCTTGAGGAATTCAGGGTTTTCGTACTGCGGCGTACCCTCGACATTGAAGGTGGGGATGGCTACCAGTTCGCGCAGGGTTTCGGTAGCGGCTTTGCCATACTTG  >  NC_002947/254534‑254829

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.