New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	350416 =	27 (0.850)	6 (0.200)	6/234	NT	18.9%	coding (459/633 nt)	hisB	imidazoleglycerol‑phosphate dehydratase
	?	NC_002947	350442 =	26 (0.870)					coding (485/633 nt)	hisB	imidazoleglycerol‑phosphate dehydratase

CCGCTACGGCCACGCCTACGTGCCGCTGGACGAAGCGCTGTCACGCGTGGTCATCGACTTCTCTGGCCGCCCAGGCCTGCAGATGCACGTACCGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTCAAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCACCCTCGACGAGCGTATGGCCGGGCAGAT  >  NC_002947/350269‑350565                                                                                                                                                    |                                                                                                                                                      acaggcaccctttggtggaaggcatctgcccggccatacgctcgtcgagggtgatggccatgcgcagagcgcggccgaaagccttgaatacggtttcgatctggtggtgggtgttgtggccacgcaggttgtcgatatgcagggttaCCa                                                                                                                                                     <  2:374377‑M1/3‑1 (MQ=255)    cTACGGCCACGCCTACGTGCCGCTGGACGACGCGCTGTCACGCGTGGTCATCGACTTCTCTGGCCGCCCAGGCCTGCTGATGCACGTACCGTATACCCGTGCCAGCGTTGGCGACTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAggg                                                                                                                                                  >  1:57015/1‑150 (MQ=255)        ggCCACGCCTACGTGCCGCTGGACGAAGCGCTGTCACGCGTGGTCATCGACTTCTCTGGCCGCCCAGGCCTGCAGATGCACGTACCGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTc                                                                                                                                              <  1:849196/150‑1 (MQ=255)                                 aaGCGCTGTCACGCGTGGTCATCGACTTCTCTGGCCGCCCAGGCCTGCAGATGCACGTACCGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGc                                                                                                                     <  2:246279/150‑1 (MQ=255)                                        gTCACGCGTGGTCATCGACTTCTCTGGCCGCCCAGGCCTGCAGATGCACGTACCGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGa                                                                                                              >  1:214107/1‑150 (MQ=255)                                                      tCGACTTCTCTGGCCGCCCAGGCCTGCAGATGCACGTACCGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGcc                                                                                                <  2:21589/150‑1 (MQ=255)                                                          cTTCTCTGGCCGCCCAGGCCTGCAGATGCACGTACCGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCacaa                                                                                            <  2:780553/150‑1 (MQ=255)                                                           ttCTCTGGCCGCCCAGGCCTGCAGATGCACGTACCGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCatat                                                                                                                 >  2:395389/1‑128 (MQ=255)                                                           ttCTCTGGCCGCCCAGGCCTGCAGATGCACGTACCGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCatat                                                                                                                 <  1:395389/128‑1 (MQ=255)                                                                       ccAGGCCTGCAGATGCACGTACCGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGGCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAg                                                                               >  2:160958/1‑150 (MQ=255)                                                                              tGCAGATGCACGTACCGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGaaa                                                                        <  1:97997/150‑1 (MQ=255)                                                                                   aTGCACGTACCGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTa                                                                   >  2:733615/1‑150 (MQ=255)                                                                                    ttgaatacggtttcgatctggtggtgggtgttgtggccacgcaggttgtcgatatgcagggttaCCAGGGCTTCGTCAACCACGCCCTGGt                                                                                                                             <  2:523364‑M1/27‑1 (MQ=255)                                                                                    ttgaatacggtttcgatctggtggtgggtgttgtggccacgcaggttgtcgatatgcagggttaCCAGGGCTTCGTCAACCACGCCCTGGt                                                                                                                             >  1:523364‑M1/65‑91 (MQ=255)                                                                                       aatacggtttcgatctggtggtgggtgttgtggccacgcaggttgtcgatatgcagggttaCCAGGGCTTCGTCAACCACGCCCTgg                                                                                                                              <  1:763347‑M1/26‑1 (MQ=255)                                                                                       aatacggtttcgatctggtggtgggtgttgtggccacgcaggttgtcgatatgcagggttaCCAGGGCTTCGTCAACCACGCCCTgg                                                                                                                              >  2:763347‑M1/62‑87 (MQ=255)                                                                                         gtacattataCCCGTGCCAGCGTTGGCGGCTTCGATGTCGCCCTGTTCCAGGAGTTTTTCCAGGGCTTTGTCAACCACGCCCTCGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTCAAg                                                             <  2:192741/144‑1 (MQ=255)                                                                                             cGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGc                                                                                                                                                 <  2:671864/62‑1 (MQ=255)                                                                                             cGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGc                                                                                                                                                 >  1:671864/1‑62 (MQ=255)                                                                                             cGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGt                                                                                                    >  2:95982/1‑107 (MQ=255)                                                                                             cGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGt                                                                                                    <  1:95982/107‑1 (MQ=255)                                                                                                    tctggtggtgggtgttgtggccacgcaggttgtcgatatgcagggttaCCAGGGCTTCGTCAACCACGCCCTg                                                                                                                               <  2:575226‑M1/25‑1 (MQ=255)                                                                                                    tctggtggtgggtgttgtggccacgcaggttgtcgatatgcagggttaCCAGGGCTTCGTCAACCACGCCCTg                                                                                                                               >  1:575226‑M1/49‑73 (MQ=255)                                                                                                                gggcggcTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTCAAGGCTTTCGGCCGCGCTCTGCGCAt                                      <  2:386755/149‑1 (MQ=255)                                                                                                                     gcTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTCAAGGCTTTCGGCCGCGCTCTGCGCATGGCCa                                 >  2:642104/1‑150 (MQ=255)                                                                                                                         cGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTCAAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCAc                             <  1:642104/150‑1 (MQ=255)                                                                                                                                gACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTCAAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCACCCTcgac                      >  2:789528/1‑150 (MQ=255)                                                                                                                                 aCCTGTTCAAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTCAAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCACCCTcgacg                     >  1:202522/1‑150 (MQ=255)                                                                                                                                    tGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTCAAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCACCCTCGACGAGc                  <  1:733615/150‑1 (MQ=255)                                                                                                                                          aGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTCAAGGCTTTCGGCCGCGCTCTGCGCATGGCCa                                 <  2:568031/129‑1 (MQ=255)                                                                                                                                          aGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTCAAGGCTTTCGGCCGCGCTCTGCGCATGGCCa                                 >  1:568031/1‑129 (MQ=255)                                                                                                                                          aGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTCAAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCAcc                            >  2:178158/1‑134 (MQ=255)                                                                                                                                          aGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTCAAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCAcc                            <  1:178158/134‑1 (MQ=255)                                                                                                                                              gTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTCAAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCACCCTCGACGAGCGTATGGCCgg        <  2:373985/150‑1 (MQ=255)                                                                                                                                               tttttCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTCAAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCACCCTCGACGAGCGTATGGCCggg       >  1:799767/1‑150 (MQ=255)                                                                                                                                                    CCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTCAAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCACCCTCGACGAGCGTATGGCAGCGCAGAt  >  2:214107‑M1/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CCGCTACGGCCACGCCTACGTGCCGCTGGACGAAGCGCTGTCACGCGTGGTCATCGACTTCTCTGGCCGCCCAGGCCTGCAGATGCACGTACCGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTCAAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCACCCTCGACGAGCGTATGGCCGGGCAGAT  >  NC_002947/350269‑350565

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.