New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	350416 =	27 (0.850)	6 (0.200)	6/234	NT	18.9%	coding (459/633 nt)	hisB	imidazoleglycerol‑phosphate dehydratase
	?	NC_002947	350442 =	26 (0.870)					coding (485/633 nt)	hisB	imidazoleglycerol‑phosphate dehydratase

AAGCGCTGTCACGCGTGGTCATCGACTTCTCTGGCCGCCCAGGCCTGCAGATGCACGTACCGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑AAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCACCCTCGACGAGCGTATGGCCGGGCAGATGCCTTCCACCAAAGGGTGCCTGT  >  NC_002947/350301‑350588                                                                                                                                              |                                                                                                                                                    aaGCGCTGTCACGCGTGGTCATCGACTTCTCTGGCCGCCCAGGCCTGCAGATGCACGTACCGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGc                                                                                                                                             <  2:246279/150‑1 (MQ=255)        gTCACGCGTGGTCATCGACTTCTCTGGCCGCCCAGGCCTGCAGATGCACGTACCGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGa                                                                                                                                      >  1:214107/1‑150 (MQ=255)                      tCGACTTCTCTGGCCGCCCAGGCCTGCAGATGCACGTACCGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGcc                                                                                                                        <  2:21589/150‑1 (MQ=255)                          cTTCTCTGGCCGCCCAGGCCTGCAGATGCACGTACCGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCacaa                                                                                                                    <  2:780553/150‑1 (MQ=255)                           ttCTCTGGCCGCCCAGGCCTGCAGATGCACGTACCGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCatat                                                                                                                                         <  1:395389/128‑1 (MQ=255)                           ttCTCTGGCCGCCCAGGCCTGCAGATGCACGTACCGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCatat                                                                                                                                         >  2:395389/1‑128 (MQ=255)                                       ccAGGCCTGCAGATGCACGTACCGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGGCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAg                                                                                                       >  2:160958/1‑150 (MQ=255)                                              tGCAGATGCACGTACCGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGaaa                                                                                                <  1:97997/150‑1 (MQ=255)                                                   aTGCACGTACCGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTa                                                                                           >  2:733615/1‑150 (MQ=255)                                                    ttgaatacggtttcgatctggtggtgggtgttgtggccacgcaggttgtcgatatgcagggttaCCAGGGCTTCGTCAACCACGCCCTGGt                                                                                                                                                     <  2:523364‑M1/27‑1 (MQ=255)                                                    ttgaatacggtttcgatctggtggtgggtgttgtggccacgcaggttgtcgatatgcagggttaCCAGGGCTTCGTCAACCACGCCCTGGt                                                                                                                                                     >  1:523364‑M1/65‑91 (MQ=255)                                                         gtacattataCCCGTGCCAGCGTTGGCGGCTTCGATGTCGCCCTGTTCCAGGAGTTTTTCCAGGGCTTTGTCAACCACGCCCTCGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑AAg                                                                                    <  2:192741/144‑1 (MQ=255)                                                             cGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGt                                                                                                                            <  1:95982/107‑1 (MQ=255)                                                             cGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGt                                                                                                                            >  2:95982/1‑107 (MQ=255)                                                                                gggcggcTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑AAGGCTTTCGGCCGCGCTCTGCGCAt                                                             <  2:386755/149‑1 (MQ=255)                                                                                     gcTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑AAGGCTTTCGGCCGCGCTCTGCGCATGGCCa                                                        >  2:642104/1‑150 (MQ=255)                                                                                         cGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑AAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCAc                                                    <  1:642104/150‑1 (MQ=255)                                                                                                gACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑AAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCACCCTcgac                                             >  2:789528/1‑150 (MQ=255)                                                                                                 aCCTGTTCAAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑AAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCACCCTcgacg                                            >  1:202522/1‑150 (MQ=255)                                                                                                    tGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑AAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCACCCTCGACGAGc                                         <  1:733615/150‑1 (MQ=255)                                                                                                          aGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑AAGGCTTTCGGCCGCGCTCTGCGCATGGCCa                                                        >  1:568031/1‑129 (MQ=255)                                                                                                          aGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑AAGGCTTTCGGCCGCGCTCTGCGCATGGCCa                                                        <  2:568031/129‑1 (MQ=255)                                                                                                          aGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑AAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCAcc                                                   >  2:178158/1‑134 (MQ=255)                                                                                                          aGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑AAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCAcc                                                   <  1:178158/134‑1 (MQ=255)                                                                                                              gTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑AAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCACCCTCGACGAGCGTATGGCCgg                               <  2:373985/150‑1 (MQ=255)                                                                                                               tttttCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑AAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCACCCTCGACGAGCGTATGGCCggg                              >  1:799767/1‑150 (MQ=255)                                                                                                                   accagggcgtggttgacgaagccctggTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑aa                                                                                     >  1:523364‑M2/28‑91 (MQ=255)                                                                                                                   accagggcgtggttgacgaagccctggTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑aa                                                                                     <  2:523364‑M2/64‑1 (MQ=255)                                                                                                                    ccagggcgtggttgacgaagccctggTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTAtt                                                                                         >  2:763347‑M2/27‑87 (MQ=255)                                                                                                                    ccagggcgtggttgacgaagccctggTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTAtt                                                                                         <  1:763347‑M2/61‑1 (MQ=255)                                                                                                                    CCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑AAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCACCCTCGACGAGCGTATGGCAGCGCAGAt                         >  2:214107‑M1/1‑150 (MQ=255)                                                                                                                     cagggcgtggttgacgaagccctggTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGa                                                                                                      <  2:575226‑M2/48‑1 (MQ=255)                                                                                                                     cagggcgtggttgacgaagccctggTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGa                                                                                                      >  1:575226‑M2/26‑73 (MQ=255)                                                                                                                      AGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑AAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCACCCTCGACGAGCGTATGGCCGGGCAGATGc                       <  1:572077‑M1/150‑1 (MQ=255)                                                                                                                           ttCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑AAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCACCCTCGACGAGCGTATGGCCGGGCAGATGCCTTcc                  <  1:829024/150‑1 (MQ=255)                                                                                                                           ttCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑AAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCACCCTCGACGAGCGTATGGCCGGGCAGATGCCTTcc                  >  2:829024/1‑150 (MQ=255)                                                                                                                                  aCCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTCAAAAACCTTC‑GCCGCGCTCTGCGCATGGCCATCACCCTCGACGAGAGTATGGACGGGCAGATGCCTTCCACCACAg           >  1:613069/1‑150 (MQ=255)                                                                                                                                   ccACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑AAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCACCCTCGACGAGCGTATGGCCGGGCAGATGCCTTCCACCAAAgg          >  1:9756/1‑150 (MQ=255)                                                                                                                                           tggTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑AAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCACCCTCGACGAGCGTATGGCCGGGCAGATGCCTTCCACCAAAGGGTGCCTGt  <  2:374377‑M2/147‑1 (MQ=255)                                                                                                                                              tAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑AAGGCTTTCGGCCGCTCTCTGCGCATGGCCATCACCCTCGACGAGCGTATGGCCgg                               >  1:743791/1‑118 (MQ=255)                                                                                                                                              tAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑AAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCACCCTCGACGAGCGTATGGCCgg                               <  2:743791/118‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                    AAGCGCTGTCACGCGTGGTCATCGACTTCTCTGGCCGCCCAGGCCTGCAGATGCACGTACCGTATACCCGTGCCAGCGTTGGCGGCTTCGATGTCGACCTGTTCCAGGAGTTTTTCCAGGGCTTCGTCAACCACGCCCTGGTAACCCTGCATATCGACAACCTGCGTGGCCACAACACCCACCACCAGATCGAAACCGTATTC‑AAGGCTTTCGGCCGCGCTCTGCGCATGGCCATCACCCTCGACGAGCGTATGGCCGGGCAGATGCCTTCCACCAAAGGGTGCCTGT  >  NC_002947/350301‑350588

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.