New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	497681 =	35 (1.110)	3 (0.100)	3/238	NT	7.5%	coding (1550/2388 nt)	PP_0409	two‑component system sensor histidine kinase
	?	NC_002947	497744 =	40 (1.320)					coding (1613/2388 nt)	PP_0409	two‑component system sensor histidine kinase

GGAGCGTGACCCGGCCGAGGGCGATCTGGAGTTCCCCTATATCAGTGAGGGTAGCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTG  >  NC_002947/497532‑497821                                                                                                                                                      |                                                                                                                                             gtcgcgcagctgctcctgggacttcgccagcgccagctcggcccgcttgccctgtgtgatgtcccagactacaccgtcccacactacctggccgttgcccagatgccgggcgctggccttgatatcggcccagcgctgttcgccctgccg                                                                                                                                              <  1:338405‑M1/1‑1 (MQ=255)  tcgcgcagctgctcctgggacttcgccagcgccagctcggcccgcttgccctgtgtgatgtcccagactacaccgtcccacactacctggccgttgcccagatgccgggcgctggccttgatatcggcccagcgctgttcgccctgccgg                                                                                                                                             >  2:467601‑M1/149‑150 (MQ=255)  tcgcgcagctgctcctgggacttcgccagcgccagctcggcccgcttgccctgtgtgatgtcccagactacaccgtcccacactacctggccgttgcccagatgccgggcgctggccttgatatcggcccagcgctgttcgccctgccgg                                                                                                                                             >  2:338405‑M1/149‑150 (MQ=255)  gAGCGTGCCCCGGCCGAGGGCGATCTGGAGTTCCCCTATATCAGTGAGGGTAGCGAGGCTTTGGTGGGTTATGCACCCAGCGGGATCCAGCATCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAgg                                                                                                                                             <  2:204861/150‑1 (MQ=255)    gcgcagctgctcctgggacttcgccagcgccagctcggcccgcttgccctgtgtgatgtcccagactacaccgtcccacactacctggccgttgcccagatgccgggcgctggccttgatatcggcccagcgctgttcgccctgccGGGt                                                                                                                                           <  1:388516‑M1/4‑1 (MQ=255)      gTGACCCGGCCGAGGGCGATCTGGAGTTCCCCTATATCAGTGAGGGTAGCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGc                                                                                                                                         >  2:491497/1‑150 (MQ=255)                               gTTCCCCTATATCAGTGAGGGTAGCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCa                                                                                                                <  2:851992/150‑1 (MQ=255)                                  ccccTATATCAGTCAGGGTAGCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTCCACCCCGAGGACCGTGCTGATTATCACAGGCTGCAGGACCTGGCCCTGGCCAGCGACCAGGa                                                                                                             <  2:886/150‑1 (MQ=255)                                    ccTATATCAGTGAGGGTAGCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACt                                                                                                           >  2:30571/1‑150 (MQ=255)                                      tataTTAGGGAGGTTAGCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTgg                                                                                                         <  2:641788/150‑1 (MQ=255)                                        tatCAGTGAGGGTAGCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCCGCGACCAGGACTGGTc                                                                                                       >  2:128708/1‑150 (MQ=255)                                        tatCAGTGAGGGTAGCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTc                                                                                                       >  1:461765/1‑150 (MQ=255)                                                 gggTAGCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAggg                                                                                              <  1:708133/150‑1 (MQ=255)                                                   gTAGCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGgc                                                                                            <  1:227908/150‑1 (MQ=255)                                                          ggCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCt                                                                                     >  2:544042/1‑150 (MQ=255)                                                             gtcccagactacaccgtcccacactacctggccgttgcccagatgccgggcgctggccttgatatcggcccagcgctgttcgccctgccGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCAc                                                                                  >  2:379727‑M1/90‑150 (MQ=255)                                                                 gtggGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGgc                                                                                            <  1:763483/136‑1 (MQ=255)                                                                 gtggGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGgc                                                                                            >  2:763483/1‑136 (MQ=255)                                                                 cagactacaccgtcccacactacctggccgttgcccagatgccgggcgctggccttgatatcggcccagcgctgttcgccctgccGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCgg                                                                              <  1:808255‑M1/65‑1 (MQ=255)                                                                   gactacaccgtcccacactacctggccgttgcccagatgccgggcgctggccttgatatcggcccagcgctgttcgccctgccGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCa                                                                            >  2:808255‑M1/84‑150 (MQ=255)                                                                     gTTATGCACCCAGCGAGATCCAGCACCCGCAGAGGGGCCGGCGCAACCTGGGGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAgg                                                                          >  1:448023/1‑150 (MQ=255)                                                                       tATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGc                                                                        <  2:461765/150‑1 (MQ=255)                                                                        aTGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCAccc                                                                                <  1:699951/141‑1 (MQ=255)                                                                        aTGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCAccc                                                                                >  2:699951/1‑141 (MQ=255)                                                                           cACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAAc                                                                    <  2:448023/150‑1 (MQ=255)                                                                                cacactacctggccgttgcccagatgccgggcgctggccttgatatcggcccagcgctgttcgccctgccgg                                                                                                                                             <  1:110524‑M1/2‑1 (MQ=255)                                                                                cacactacctggccgttgcccagatgccgggcgctggccttgatatcggcccagcgctgttcgccctgccgg                                                                                                                                             >  2:110524‑M1/71‑72 (MQ=255)                                                                                aGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAgcgc                                                               >  1:443698/1‑150 (MQ=255)                                                                                  cGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTg                                                             >  2:436812/1‑150 (MQ=255)                                                                                         cAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTg                                                                                                    >  1:576718/1‑104 (MQ=255)                                                                                         cAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTg                                                                                                    <  2:576718/104‑1 (MQ=255)                                                                                               ccGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAg                                                >  2:825551/1‑150 (MQ=255)                                                                                                 gCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGc                                              <  1:491497/150‑1 (MQ=255)                                                                                                          ccTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCg                                     <  1:544042/150‑1 (MQ=255)                                                                                                                    cTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGc                           >  1:227083/1‑150 (MQ=255)                                                                                                                       gTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAg                                                                                                <  1:362405/78‑1 (MQ=255)                                                                                                                       gTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAg                                                                                                >  2:362405/1‑78 (MQ=255)                                                                                                                          cACCCCGAGGACCGTGCTGATTATTACAGGGTGCAGGACCTGGCCCTGGCCAGAGACCAGGACTGGTCCTGGCAGGGGAGCATCCTCACCCGGTAGGGCGAACAGCGCTGGGCCGATATAAAGGACAGCGGCAGGAATGTGGGCAACGGc                     >  2:342705/1‑150 (MQ=255)                                                                                                                            ccccGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCGCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGccc                   >  1:360682/1‑149 (MQ=255)                                                                                                                             cccGACGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAg                  <  1:342705/150‑1 (MQ=255)                                                                                                                                           tGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACgg    >  1:665556/1‑150 (MQ=255)                                                                                                                                            gATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGgt   <  2:665556/150‑1 (MQ=255)                                                                                                                                             aTTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATGTCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGgtg  <  1:601916/150‑1 (MQ=255)                                                                                                                                              ttATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACg                       >  2:645574/1‑128 (MQ=255)                                                                                                                                              ttATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACg                       <  1:645574/128‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                             GGAGCGTGACCCGGCCGAGGGCGATCTGGAGTTCCCCTATATCAGTGAGGGTAGCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTG  >  NC_002947/497532‑497821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.