| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 497681 = | 35 (1.110) | 3 (0.100) | 3/238 | NT | 7.5% | coding (1550/2388 nt) | PP_0409 | two‑component system sensor histidine kinase |
| ? | NC_002947 | 497744 = | 40 (1.320) | coding (1613/2388 nt) | PP_0409 | two‑component system sensor histidine kinase | |||||
GTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTGCGCGAA > NC_002947/497596‑497892 | cagactacaccgtcccacactacctggccgttgcccagatgccgggcgctggccttgatatcggcccagcgctgttcgccctgccGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCgg < 1:808255‑M1/65‑1 (MQ=255) gactacaccgtcccacactacctggccgttgcccagatgccgggcgctggccttgatatcggcccagcgctgttcgccctgccGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCa > 2:808255‑M1/84‑150 (MQ=255) gTTATGCACCCAGCGAGATCCAGCACCCGCAGAGGGGCCGGCGCAACCTGGGGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAgg > 1:448023/1‑150 (MQ=255) tATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGc < 2:461765/150‑1 (MQ=255) cACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAAc < 2:448023/150‑1 (MQ=255) aGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAgcgc > 1:443698/1‑150 (MQ=255) cGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTg > 2:436812/1‑150 (MQ=255) ccGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAg > 2:825551/1‑150 (MQ=255) gCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGc < 1:491497/150‑1 (MQ=255) ccTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCg < 1:544042/150‑1 (MQ=255) cTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGc > 1:227083/1‑150 (MQ=255) cACCCCGAGGACCGTGCTGATTATTACAGGGTGCAGGACCTGGCCCTGGCCAGAGACCAGGACTGGTCCTGGCAGGGGAGCATCCTCACCCGGTAGGGCGAACAGCGCTGGGCCGATATAAAGGACAGCGGCAGGAATGTGGGCAACGGc > 2:342705/1‑150 (MQ=255) ccccGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCGCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGccc > 1:360682/1‑149 (MQ=255) cccGACGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAg < 1:342705/150‑1 (MQ=255) tGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACgg > 1:665556/1‑150 (MQ=255) gATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGgt < 2:665556/150‑1 (MQ=255) aTTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATGTCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGgtg < 1:601916/150‑1 (MQ=255) ttATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACg > 2:645574/1‑128 (MQ=255) ttATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACg < 1:645574/128‑1 (MQ=255) tgccgggtgaggatgcgcccctgccaggaccagtcctggtcgctggccagggccaggtcctgcacccGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTc > 2:808255‑M2/68‑150 (MQ=255) ccgggtgaggatgcgcccctgccaggaccagtcctggtcgctggccagggccaggtcctgcacccGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTg < 1:808255‑M2/85‑1 (MQ=255) gtgaggatgcgcccctgccaggaccagtcctggtcgctggccagggccaggtcctgcacccGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGAc > 2:379727‑M2/62‑150 (MQ=255) cAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATc < 1:825551/150‑1 (MQ=255) aGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATca > 2:532203/1‑150 (MQ=255) gACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATcaca > 2:480992/1‑150 (MQ=255) cctggccctggcCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATcacaca > 2:388516/1‑150 (MQ=255) ctggccctggccAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGTGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTg > 2:141770/1‑137 (MQ=255) ctggccctggccAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAgg > 2:699561/1‑85 (MQ=255) ctggccctggccAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAgg < 1:699561/85‑1 (MQ=255) ctggccctggccAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTg < 1:141770/137‑1 (MQ=255) ctggccctggccAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAg < 2:227083/150‑1 (MQ=255) ctggccctggccAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAg > 1:114693/1‑150 (MQ=255) ctggccctggccAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAg > 1:114646/1‑150 (MQ=255) atggccctggcaAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAg > 2:814229/2‑150 (MQ=255) gccAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCgg < 1:436812/150‑1 (MQ=255) aGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTgg < 1:451871/126‑1 (MQ=255) aGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTgg > 2:451871/1‑126 (MQ=255) cGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGa < 1:128708/150‑1 (MQ=255) ggACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGtgtg > 1:564277/1‑102 (MQ=255) ggACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGtgtg < 2:564277/102‑1 (MQ=255) gACTGGTCCTGGCAGGGGCGTATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACAt > 2:579599/1‑122 (MQ=255) gACTGGTCCTGGCAGGGGCGTATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACAt < 1:579599/122‑1 (MQ=255) tGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAgctggcgctg > 2:431455/1‑150 (MQ=255) gTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTTGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAgctggcgctggc < 1:532203/150‑1 (MQ=255) cTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGTCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGaa < 1:30571/150‑1 (MQ=255) acccGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTgcgc < 1:388516‑M2/146‑1 (MQ=255) ccGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGtgtg > 2:110524‑M2/3‑72 (MQ=255) ccGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGtgtg < 1:110524‑M2/70‑1 (MQ=255) ccGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTGCGCGa > 2:467601‑M2/3‑150 (MQ=255) ccGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTGCGCGa > 2:338405‑M2/3‑150 (MQ=255) cGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTGCGCgac < 1:338405‑M2/149‑2 (MQ=255) | GTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTGCGCGAA > NC_002947/497596‑497892 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |