New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1022041 =	37 (1.170)	6 (0.200)	6/234	NT	14.3%	intergenic (‑52/+40)	dppB/dppA‑I	dipeptide ABC transporter permease/dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	1022070 =	37 (1.240)					intergenic (‑81/+11)	dppB/dppA‑I	dipeptide ABC transporter permease/dipeptide ABC transporter substrate‑binding protein

CCGGGGATCAGGCGTATGAGCGCGAAGGTCAGCAAGGTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGCCATGCTGA  >  NC_002947/1021895‑1022187                                                                                                                                                   |                                                                                                                                                    ccGGGGATCAGGCGTATGAGCGCGAAGGTCAGCAAGGTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCACCATCGTCGTGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTgccgc                                                                                                                                                  >  2:331510/1‑150 (MQ=255)                   caaccctggatcagcatggctcatccaaagatgttcaccgccatgcgtgacaacgtggagggctacgtgatcaaccctctgaccaacaacaacttcgccaccaccaaggtgaagtagaacaacaacgaCCGCCGGTC‑CCCGTgtgggtgg                                                                                                                               <  2:569083‑M1/22‑1 (MQ=255)                        gAAGGTCAGCAAGGTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGGGTGGGTGGCcggc                                                                                                                          <  2:34242/150‑1 (MQ=255)                         aaGGTAAGCAAGTTTATGCCGAAAAAGGTCGGTCTAAACAGGCCAAGGCGCAGGGTAATAGTGCTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCcggcg                                                                                                                         <  2:627092/150‑1 (MQ=255)                               aGCAAGGTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGc                                                                                                                              >  2:96396/1‑139 (MQ=255)                               aGCAAGGTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGc                                                                                                                              <  1:96396/139‑1 (MQ=255)                               aGCAAGGTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCgtt                                                                                                                   <  2:92707/150‑1 (MQ=255)                                 catggctcatccaaagatgttcaccgccatgcgtgacaacgtggagggctacgtgatcaaccctctgaccaacaacaacttcgccaccaccaaggtgaagtagaacaacaacgaCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCgttgt                                                                                                                 <  2:732498‑M1/36‑1 (MQ=255)                                  aaGGTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCgttgtt                                                                                                                >  2:234551/1‑150 (MQ=255)                                   aGGTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCgttgttg                                                                                                               <  2:427130/150‑1 (MQ=255)                                     gctcatccaaagatgttcaccgccatgcgtgacaacgtggagggctacgtgatcaaccctctgaccaacaacaacttcgccaccaccaaggtgaagtagaacaacaacgaCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCgttgttgtt                                                                                                             >  1:732498‑M1/111‑150 (MQ=255)                                     gTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCgttgttgtt                                                                                                             <  1:842268/150‑1 (MQ=255)                                          gCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAACCTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACt                                                                                                        <  1:32541/150‑1 (MQ=255)                                                                  gCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAgttgt                                                                                >  2:182149/1‑150 (MQ=255)                                                                   ccAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAgttgtt                                                                               <  2:739357/150‑1 (MQ=255)                                                                      aacgtggagggctacgtgatcaaccctctgaccaacaacaacttcgccaccaccaaggtgaagtagaacaacaacgaCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCgttg                                                                                                                  >  1:55632‑M1/78‑112 (MQ=255)                                                                      aacgtggagggctacgtgatcaaccctctgaccaacaacaacttcgccaccaccaaggtgaagtagaacaacaacgaCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCgttg                                                                                                                  <  2:55632‑M1/35‑1 (MQ=255)                                                                      aGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAgttgttgtt                                                                            >  1:132013/1‑150 (MQ=255)                                                                            cGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCag                                                                      >  2:559478/1‑150 (MQ=255)                                                                             gggCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCaga                                                                     <  1:360264/150‑1 (MQ=255)                                                                              ggCAATAAAACTCAACATTGTCGGGTTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCagag                                                                    <  1:583280/150‑1 (MQ=255)                                                                                cAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAggg                                                                  <  1:234551/150‑1 (MQ=255)                                                                                 aaTAAAACTCAACTTTGTCGGGGTTACCTCATCAGGGCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGt                                                                 <  1:563553/150‑1 (MQ=255)                                                                                                  tCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTcc                                                >  1:49730/1‑150 (MQ=255)                                                                                                       cttACCTCCTCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGtt                                           <  1:70568/149‑1 (MQ=255)                                                                                                             tcatcaGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGACGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACg                                     >  2:513580/1‑150 (MQ=255)                                                                                                               atcaGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAgttgtt                                                                               >  1:2948/1‑106 (MQ=255)                                                                                                               atcaGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAgttgtt                                                                               <  2:2948/106‑1 (MQ=255)                                                                                                                    gCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTc                                                                                                            <  1:427875/72‑1 (MQ=255)                                                                                                                    gCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTc                                                                                                            >  2:427875/1‑72 (MQ=255)                                                                                                                    gCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTc                                        <  2:56680/140‑1 (MQ=255)                                                                                                                    gCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTc                                        >  1:56680/1‑140 (MQ=255)                                                                                                                         ggggCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGaa                         <  1:559478/150‑1 (MQ=255)                                                                                                                            gCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACAt                      >  1:698946/1‑150 (MQ=255)                                                                                                                                tCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACg                                             >  1:364426/1‑123 (MQ=255)                                                                                                                                tCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACg                                             <  2:364426/123‑1 (MQ=255)                                                                                                                                tCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCttt                  <  2:49730/150‑1 (MQ=255)                                                                                                                                tCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGATGTCACGCATGGCGGTGAACATCttt                  <  1:331510/150‑1 (MQ=255)                                                                                                                                  aagtagaacaacaacgaCCGCCGGCCACCCACACGGG‑GACCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTgg                <  1:569083‑M1/133‑1 (MQ=255)                                                                                                                                     ccGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCa                                                           >  1:315155/1‑104 (MQ=255)                                                                                                                                     ccGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCa                                                           <  2:315155/104‑1 (MQ=255)                                                                                                                                            ggCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGaa                         <  2:841051/131‑1 (MQ=255)                                                                                                                                            ggCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGaa                         >  1:841051/1‑131 (MQ=255)                                                                                                                                             gCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGCCATGc     >  1:535365/1‑150 (MQ=255)                                                                                                                                               aGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGt                            >  2:351515/1‑125 (MQ=255)                                                                                                                                               aGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGt                            <  1:351515/125‑1 (MQ=255)                                                                                                                                                gTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGCCATGCTGa  <  1:182149/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CCGGGGATCAGGCGTATGAGCGCGAAGGTCAGCAAGGTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGCCATGCTGA  >  NC_002947/1021895‑1022187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.