New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1022041 =	37 (1.170)	6 (0.200)	6/234	NT	14.3%	intergenic (‑52/+40)	dppB/dppA‑I	dipeptide ABC transporter permease/dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	1022070 =	37 (1.240)					intergenic (‑81/+11)	dppB/dppA‑I	dipeptide ABC transporter permease/dipeptide ABC transporter substrate‑binding protein

AGCAAGGTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGCCATGCTGATCCAGGGTTGTTCGTCATCGTACACTTTCAAT  >  NC_002947/1021925‑1022219                                                                                                                                                   |                                                                                                                                                      aGCAAGGTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCgtt                                                                                                                                                   <  2:92707/150‑1 (MQ=255)   catggctcatccaaagatgttcaccgccatgcgtgacaacgtggagggctacgtgatcaaccctctgaccaacaacaacttcgccaccaccaaggtgaagtagaacaacaacgaCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCgttgt                                                                                                                                                 <  2:732498‑M1/36‑1 (MQ=255)    aaGGTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCgttgtt                                                                                                                                                >  2:234551/1‑150 (MQ=255)     aGGTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCgttgttg                                                                                                                                               <  2:427130/150‑1 (MQ=255)       gctcatccaaagatgttcaccgccatgcgtgacaacgtggagggctacgtgatcaaccctctgaccaacaacaacttcgccaccaccaaggtgaagtagaacaacaacgaCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCgttgttgtt                                                                                                                                             >  1:732498‑M1/111‑150 (MQ=255)       gTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCgttgttgtt                                                                                                                                             <  1:842268/150‑1 (MQ=255)            gCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAACCTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACt                                                                                                                                        <  1:32541/150‑1 (MQ=255)              ccaaagatgttcaccgccatgcgtgacaacgtggagggctacgtgatcaaccctctgaccaacaacaacttcgccaccaccaaggtgaagtagaacaacaacgaccgccggtccccgtgtgggtggccggcggTCGTTGTTGTTCTACtt                                                                                                                                       <  1:569083‑M2/17‑1 (MQ=255)                                    gCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAgttgt                                                                                                                >  2:182149/1‑150 (MQ=255)                                     ccAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAgttgtt                                                                                                               <  2:739357/150‑1 (MQ=255)                                        aacgtggagggctacgtgatcaaccctctgaccaacaacaacttcgccaccaccaaggtgaagtagaacaacaacgaCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCgttg                                                                                                                                                  >  1:55632‑M1/78‑112 (MQ=255)                                        aacgtggagggctacgtgatcaaccctctgaccaacaacaacttcgccaccaccaaggtgaagtagaacaacaacgaCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCgttg                                                                                                                                                  <  2:55632‑M1/35‑1 (MQ=255)                                        aGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAgttgttgtt                                                                                                            >  1:132013/1‑150 (MQ=255)                                              cGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCag                                                                                                      >  2:559478/1‑150 (MQ=255)                                               gggCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCaga                                                                                                     <  1:360264/150‑1 (MQ=255)                                                ggCAATAAAACTCAACATTGTCGGGTTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCagag                                                                                                    <  1:583280/150‑1 (MQ=255)                                                  cAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAggg                                                                                                  <  1:234551/150‑1 (MQ=255)                                                   aaTAAAACTCAACTTTGTCGGGGTTACCTCATCAGGGCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGt                                                                                                 <  1:563553/150‑1 (MQ=255)                                                                    tCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTcc                                                                                >  1:49730/1‑150 (MQ=255)                                                                         cttACCTCCTCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGtt                                                                           <  1:70568/149‑1 (MQ=255)                                                                               tcatcaGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGACGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACg                                                                     >  2:513580/1‑150 (MQ=255)                                                                                 atcaGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAgttgtt                                                                                                               <  2:2948/106‑1 (MQ=255)                                                                                 atcaGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAgttgtt                                                                                                               >  1:2948/1‑106 (MQ=255)                                                                                      gCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTc                                                                                                                                            <  1:427875/72‑1 (MQ=255)                                                                                      gCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTc                                                                                                                                            >  2:427875/1‑72 (MQ=255)                                                                                      gCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTc                                                                        <  2:56680/140‑1 (MQ=255)                                                                                      gCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTc                                                                        >  1:56680/1‑140 (MQ=255)                                                                                           ggggCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGaa                                                         <  1:559478/150‑1 (MQ=255)                                                                                              gCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACAt                                                      >  1:698946/1‑150 (MQ=255)                                                                                                  tCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACg                                                                             <  2:364426/123‑1 (MQ=255)                                                                                                  tCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACg                                                                             >  1:364426/1‑123 (MQ=255)                                                                                                  tCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCttt                                                  <  2:49730/150‑1 (MQ=255)                                                                                                  tCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGATGTCACGCATGGCGGTGAACATCttt                                                  <  1:331510/150‑1 (MQ=255)                                                                                                    aagtagaacaacaacgaCCGCCGGCCACCCACACGGG‑GACCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTgg                                                <  1:569083‑M1/133‑1 (MQ=255)                                                                                                       ccGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCa                                                                                           >  1:315155/1‑104 (MQ=255)                                                                                                       ccGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCa                                                                                           <  2:315155/104‑1 (MQ=255)                                                                                                           aacaacaacgaccgccggccacccacacggggaccggcggTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGc                                          >  1:732498‑M2/41‑150 (MQ=255)                                                                                                              ggCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGaa                                                         <  2:841051/131‑1 (MQ=255)                                                                                                              ggCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGaa                                                         >  1:841051/1‑131 (MQ=255)                                                                                                               gCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGCCATGc                                     >  1:535365/1‑150 (MQ=255)                                                                                                               acaacgaccgccggccacccacacggggaccggcggTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGCCATg                                      <  2:732498‑M2/114‑1 (MQ=255)                                                                                                                caacgaccgccggccacccacacggggaccggcggTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGtt                                                                           <  2:55632‑M2/77‑1 (MQ=255)                                                                                                                caacgaccgccggccacccacacggggaccggcggTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGtt                                                                           >  1:55632‑M2/36‑112 (MQ=255)                                                                                                                 aGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGt                                                            >  2:351515/1‑125 (MQ=255)                                                                                                                 aGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGt                                                            <  1:351515/125‑1 (MQ=255)                                                                                                                  gTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGCCATGCTGa                                  <  1:182149/150‑1 (MQ=255)                                                                                                                       GCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCttt                                                  <  1:335326‑M1/129‑1 (MQ=255)                                                                                                                       GCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCttt                                                  >  2:335326‑M1/1‑129 (MQ=255)                                                                                                                       GCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGCCATGCTGATCCAg                             <  1:733758‑M1/150‑1 (MQ=255)                                                                                                                             ccacccacacggggaccggcggTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGCCATGCTGATCCAGGgttg                        <  2:569083‑M2/128‑1 (MQ=255)                                                                                                                                      gggtggCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGc                                          >  2:153843/1‑123 (MQ=255)                                                                                                                                      gggtggCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGc                                          <  1:153843/123‑1 (MQ=255)                                                                                                                                           gCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGCCATGCTGATCCAGGGTTGTTCGTCATCGTaca          <  2:132013/150‑1 (MQ=255)                                                                                                                                                   tCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGCCATGCTGATCCAGGGTTGTTCGTCATCGTACACTTTCAAt  <  2:535365/150‑1 (MQ=255)                                                                                                                                                   tCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGCCATGCTGATCCAGGGTTGTTCGTCATCGTACACTTTCAAt  <  1:513580/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                      AGCAAGGTGATGCCGAAAAAGGTCGGTATCAGCAGGCCAAGGCGCCGGGCAATAAAACTCAACATTGTCGGGGTTACCTCATCAGGCCGTGGGGCGATCAGCCCGGTACGGCAGTGCCGCCGGTC‑CCCGTGTGGGTGGCCGGCGGTCGTTGTTGTTCTACTTCACCTTGGTGGTGGCGAAGTTGTTGTTGGTCAGAGGGTTGATCACGTAGCCCTCCACGTTGTCACGCATGGCGGTGAACATCTTTGGATGAGCCATGCTGATCCAGGGTTGTTCGTCATCGTACACTTTCAAT  >  NC_002947/1021925‑1022219

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.