New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1026146	45 (1.420)	7 (0.230)	6/242	NT	14.0%	coding (825/1593 nt)	dppA‑II	dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	= 1026163	42 (1.360)					coding (808/1593 nt)	dppA‑II	dipeptide ABC transporter substrate‑binding protein

CCGCCTGGAGGATGGCTTCCTTGTTGACCGCCATGTCCATTGCCTGGCGCACTTCCAGGCGGTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGCATTCATTGCGGCGCAGCTTCTGGATACGCACCGACGGGTCGGTATTGATCGAGAACACCAGGTTGTCGATCTTCACCTCGTTCGCTGCCCAATAG  >  NC_002947/1026007‑1026293                                                                                                                                            |                                                                                                                                                     ccGCCTGGAGGATGGCTTCCTTGTTGACCGCCATGTCCATTGCCTGGCGCACTTCCAGGCGGTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGa                                                                                                                                           <  1:279262/150‑1 (MQ=255) ccGCCTGGAGGATGGCTTCCTTGTTGACCGCCATGTCCATTGCCTGGCGCACTTCCAGGCGGTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGa                                                                                                                                           >  2:114260/1‑150 (MQ=255)   gCCTGGAGGATGGCTTCCTTGTTGACCGCCATGTCCATTGCCTGGCGCACTTCCAGGCGGTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAgc                                                                                                                                         <  1:583492/150‑1 (MQ=255)     cTGGAGGATGGCTTCCTTGTTGACCGCCATGTCCATTGCCTGGCGCACTTCCAGGCGGTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAgcgc                                                                                                                                       >  2:491367/1‑150 (MQ=255)          ggATGGCTTCCTTGTTGACCGCCATGTCCATTGCCTGGCGCACTTCCAGGCGGTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGca                                                                                                                                  >  1:777379‑M2/1‑148 (MQ=255)              ggCTTCCTTGTTGACCGCCATGTCCATTGCCTGGCGCACTTCCAGGCGGTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGccggcgctcaaggccga                                                                                                                                     >  1:765146‑M1/1‑127 (MQ=255)              ggCTTCCTTGTTGACCGCCATGTCCATTGCCTGGCGCACTTCCAGGCGGTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGccggcgctcaaggccga                                                                                                                                     <  2:765146‑M1/144‑18 (MQ=255)                    cTTGTTGACCGCCATGTCCATTGCCTGGCGCACTTCCAGGCGGTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCgg                                                                                                                        >  2:309026/1‑150 (MQ=255)                      tgttgACCGCCATGTCCATTGCCTGGCGCACTTCCAGGCGGTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGc                                                                                                                      <  2:326011/150‑1 (MQ=255)                       gttgACCGCCATGTCCATTGCCTGGCGCACTTCCAGGCGGTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCg                                                                                                                     >  2:677350/1‑150 (MQ=255)                         tgACCGCCATGTCCATTGCCTGGCGCACTTCCAGGCGGTCGAATGACGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTg                                                                                                                   <  1:513076/150‑1 (MQ=255)                             cGCCATGTCCATTGCCTGGCGCACTTCCAGGCGGTCGAATGGCGGGTGATGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGCCGGCGCTCAAG‑GCCGAcagcacgctgcaggtgctcca                                                                                                               >  2:484117‑M2/1‑129 (MQ=255)                               ccATGTCCATTGCCTGGCGCACTTCCAGGCGGTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCa                                                                                                             <  1:677350/150‑1 (MQ=255)                                    tCCATTGCCTGGCGCACTTCCAGGCGGTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTc                                                                                                        <  2:452035/150‑1 (MQ=255)                                       aTTGCCTGGCGCACTTCCAGGCGGTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGCCGGCCGGGCGTGGGCGCAgggccccc                                                                                                     >  2:825810/1‑145 (MQ=255)                                        ttGCCTGGCGCACTTCCAGGCGGTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCt                                                                                                    >  1:756284/1‑150 (MQ=255)                                        ttGCCTGGCGCACTTCCAGGCGGTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCt                                                                                                    <  2:756284/150‑1 (MQ=255)                                           ccTGGCGCACTTCCAGGCGGTCGAATGGCGGGTGCTGGGTGTTGTCGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGc                                                                                                 >  1:575476/1‑150 (MQ=255)                                             tGGCGCACTTCCAGGCGGTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGcat                                                                                               >  2:227605/1‑150 (MQ=255)                                                   aCTTCCAGGCGGTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGCATTCATTg                                                                                         <  2:575476/150‑1 (MQ=255)                                                             ggTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGccggcgctcaaggccgaca                                                                                                                                   >  1:11759‑M1/1‑80 (MQ=255)                                                             ggTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGccggcgctcaaggccgaca                                                                                                                                   <  2:11759‑M1/99‑20 (MQ=255)                                                             ggTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGCATTCATTGCGGCGCAGCt                                                                               >  1:829527/1‑150 (MQ=255)                                                             ggTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGCATTCATTGCGGCGCAGCt                                                                               >  2:48362/1‑150 (MQ=255)                                                              gTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGCATTCATTGCGGCGCAGCtt                                                                              >  2:474688/1‑150 (MQ=255)                                                               tCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGTAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGCATTCATTGCGGCGCAGCTTc                                                                             <  1:346784/150‑1 (MQ=255)                                                                 gAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGCATTCATTGCGGCGCAGCTTCTg                                                                           <  2:614864/150‑1 (MQ=255)                                                                      gCGGGTGCTGGGTGTGGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCCTTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGCATTCATTGCGGCGCAGCTTCTGGATAc                                                                      <  1:825810/150‑1 (MQ=255)                                                                        gggTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGCATTCATTGCGGCGCAGCTTCTGGATACGc                                                                    <  1:474688/150‑1 (MQ=255)                                                                           tGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGACACTCATTGCGGCGCAGCTTCTGGATACGCAcc                                                                 >  2:391666/1‑150 (MQ=255)                                                                                        aGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGCATTCATTGCGGCGCAGCTTCTGGATACACACCGACGGGTCGGTAt                                                    <  2:829527/150‑1 (MQ=255)                                                                                            gATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGCATTCATTGCGGCGCAGCTTCTGGATACGCACCGACGGGTCGGTATTGAt                                                <  1:491367/150‑1 (MQ=255)                                                                                            gATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGCATTCATTGCGGCGCAGCTTCTGGATACGCACCGACGGGTCGGTATTGAt                                                >  2:83183/1‑150 (MQ=255)                                                                                               gTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGCATTCATTGCGGCGCAGCTTCTGGATACGCACCGACGGGTCGGTATTGATCga                                             <  1:114260/150‑1 (MQ=255)                                                                                                   ccGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGAATTCATTGCGGCGCAGCTTCTGGATACGCACCGACGGGTCGGt                                                      >  2:93151/1‑137 (MQ=255)                                                                                                   ccGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGAATTCATTGCGGCGCAGCTTCTGGATACGCACCGACGGGTCGGt                                                      <  1:93151/137‑1 (MQ=255)                                                                                                        gTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGccggcgctcaaggccgaca                                                                                                                                   <  1:676417‑M1/56‑20 (MQ=255)                                                                                                        gTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGccggcgctcaaggccgaca                                                                                                                                   >  2:676417‑M1/1‑37 (MQ=255)                                                                                                         ttGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGCATTCATTGCGGCGCAGCTTCTGGATACGCACCGACGGGTCGGTATTGATCGAGAACACCAgg                                   <  1:83183/150‑1 (MQ=255)                                                                                                           gAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCAcc                                                                                                     <  2:563571/82‑1 (MQ=255)                                                                                                           gAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCAcc                                                                                                     >  1:563571/1‑82 (MQ=255)                                                                                                           gAAGCCTGGTTGCTGGAGCACCTGCAGAGTGCTGTCGGC‑GTTGAGCGCTGGCAGGTCGGCCGGGCGTGGGTGCAGGGGCAGCTGGAATTCAGTGCGGCGGAGCTTCTGGGTACGTACGGACGGGTCGGTATTGATCGAGAACACCCGGtt                                 >  2:242041/1‑150 (MQ=255)                                                                                                                cTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGTCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGCATTCATTGCGGCGCAGCTTCTGGATACGCACCGACGGGTCGGTATTGATCGAGAACACCAGGTTGTCGa                            <  1:697380/150‑1 (MQ=255)                                                                                                                 tGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGc                                                                                                                           >  1:601187/1‑54 (MQ=255)                                                                                                                 tGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGc                                                                                                                           <  2:601187/54‑1 (MQ=255)                                                                                                                   gTTGCTGGAGCACCTGCAGCGTGCTGTCGGA‑ATTGAGCGCCGGCCAGTCGGCCGGGCGTGGGTGCAGGATGACCAGGCATTCAGTGCGGTTGAGCGTCTGGATACGCACCGACGGGTCGGTATTGATCGAGAACACCAGGTTGTCGATCt                         >  2:313281/1‑150 (MQ=255)                                                                                                                    ttGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGCATTCATTGCGGCGCAGCTTCTGGATACGCACCGACGGGTCGGTATTGATCGAGAACACCAGGTTGTCGATCtt                        >  2:261526/1‑150 (MQ=255)                                                                                                                       cTGGAGCACCTGCCGCGTGGTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGTTGCCGGGTCACCTGGCATTCATTGTAGCGCAGCTTCTTGATTCGCGCCCACGCGTCCGTATTGATCGAGAACACCAGGTTGTCGATCTTCAc                     <  2:248874/150‑1 (MQ=255)                                                                                                                        tGGAGCACCTGCAGCGTGCTGtcggccttgagcgccggcagcacgctgcaggtgctccagcaaccaggcttcaacctcggctacatcgcctacaacacccatcacccgccattcgaccgcctggaagtgcgccaggcaatggacatggcg                     >  2:484117‑M1/1‑21 (MQ=255)                                                                                                                            gCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGCATTCATTGCGGCGCAGCTTCTGGATACGCAc                                                                  >  1:793109/1‑100 (MQ=255)                                                                                                                            gCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGCATTCATTGCGGCGCAGCTTCTGGATACGCAc                                                                  <  2:793109/100‑1 (MQ=255)                                                                                                                                cTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGCATTCATTGCGGCGCAGCTTCTGGATACGCACCGACGGGt                                                          >  1:810665/1‑104 (MQ=255)                                                                                                                                cTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGCATTCATTGCGGCGCAGCTTCTGGATACGCACCGACGGGt                                                          <  2:810665/104‑1 (MQ=255)                                                                                                                                 tGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGCATTCATTGCGGCGCAGCTTCTGGATACGCACCGACGGGTCGGTATTGATCGAGAACACCAGGTTGTCGATCTTCACCTCGTTCGCt           <  1:309026/150‑1 (MQ=255)                                                                                                                                           tgccggcgctcaaggccgacagcacgctgcaggtgctccagcaaccaggcttcaacctcggctacatcgcctacaacacccagcacccgccattcgaccgcctggaagtgcgccaggcaatggacatggcggtcaacaaggaagccatcc  >  1:777379‑M1/1‑2 (MQ=255)                                                                                                                                           tGTCGGC‑CTTGAGCGCCGGcagcacgctgcaggtgctccagcaaccaggcttcaacctcggctacatcgcctacaacacccagcacccgccattcgacc                                                    <  2:11759‑M2/99‑81 (MQ=255)                                                                                                                                           tGTCGGC‑CTTGAGCGCCGGcagcacgctgcaggtgctccagcaaccaggcttcaacctcggctacatcgcctacaacacccagcacccgccattcgacc                                                    >  1:11759‑M2/1‑19 (MQ=255)                                                                                                                                           tGTCGGC‑CTTGAGCGCCGGcagcacgctgcaggtgctccagcaaccaggcttcaac                                                                                               <  1:676417‑M2/56‑38 (MQ=255)                                                                                                                                           tGTCGGC‑CTTGAGCGCCGGcagcacgctgcaggtgctccagcaaccaggcttcaac                                                                                               >  2:676417‑M2/1‑19 (MQ=255)                                                                                                                                            |                                                                                                                                                     CCGCCTGGAGGATGGCTTCCTTGTTGACCGCCATGTCCATTGCCTGGCGCACTTCCAGGCGGTCGAATGGCGGGTGCTGGGTGTTGTAGGCGATGTAGCCGAGGTTGAAGCCTGGTTGCTGGAGCACCTGCAGCGTGCTGTCGGC‑CTTGAGCGCCGGCAGGTCGGCCGGGCGTGGGTGCAGGGTCACCTGGCATTCATTGCGGCGCAGCTTCTGGATACGCACCGACGGGTCGGTATTGATCGAGAACACCAGGTTGTCGATCTTCACCTCGTTCGCTGCCCAATAG  >  NC_002947/1026007‑1026293

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.