New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1497637	33 (1.040)	4 (0.130)	3/234	NT	10.6%	coding (218/636 nt)	PP_1310	hypothetical protein
	?	NC_002947	= 1497672	36 (1.200)					coding (253/636 nt)	PP_1310	hypothetical protein

GTGGCGCGGTGCTGATCTGCCACCCCAACCCGGTCCAGGGCGGCACCATGCTCAACAAGGTGGTCTCGACCCTGCAGCGCACCGCACGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCGCTGCAGCATGGCTGCGTGCCAGGCACCCCGGGCTACCGCTGGTGCTGATGGGCTTTTCGTTCGGTGGTTTCGTTGCCACCAGCCTGGCCGGGCGCC  >  NC_002947/1497502‑1497786                                                                                                                                        |                                                                                                                                                      gTGGCGCGGTGCTGATCTGCCACCCCAACCCGGTCCAGGGCGGCACCATGCTCAACAAGGTGGTCTCGACCCTGCAGCGCACCGCACGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGcc                                                                                                                                         <  1:64833/150‑1 (MQ=255)      gcgGTGCTGATCTGCCACCCCAACCCGGTCCAGGGCGGCACCATGCTCAACAAGGTGGTCTCGACCCTGCAGCGCACCGCACGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGAc                                                                                                                                    >  1:611779/1‑150 (MQ=255)         gaagtGATCAGCCACCCCAACCCGGTCCAGGGCGGCACCATGCTCAACAAGGTGGTCTCGACCCTGCAGCGCACCGCACGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATg                                                                                                                                 >  2:500132/5‑150 (MQ=255)          tGCTGATCTGCCACCCCAACCCGGTCCAGGGCGGCAACATGCTCAACAAGGTGGTCTCGACCCTGCAGCGCACCGCACGTGATGCCGGTTATGTGACACTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCCGCAGCCACGACATgg                                                                                                                                >  2:196690/1‑150 (MQ=255)               aTCTGCCACCCCAACCCGGTCCAGGGCGGCACCATGCTCAACAAGGTGGTCTCGACCCTGCAGCGCACCGCACGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCt                                                                                                                           >  1:553390/1‑150 (MQ=255)                tCTGCCACCCCAACCCGGTCCAGGGCGGCACCATGCTCAACAAGGTGGTCTCGACCCTGCAGCGCACCGCACGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTg                                                                                                                          <  1:72266/150‑1 (MQ=255)                  tGCCACCCCAACCCGGTCCAGGGCGGCACCATGCTCAACAAGGTGGTCTCGACCCTGCAGCGCACCGCACGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCCTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGc                                                                                                                        <  2:494737/150‑1 (MQ=255)                        cccAACCCGGTCCAGGGCGGCACCATGCTCAACAAGGTGGTCTCGACCCTGCAGCGCACCGCACGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGtg                                                                                                                  <  1:140382‑M2/150‑3 (MQ=255)                                ggTCCAGGGCGGCACCATGCTCAACAAGGTGGTCTCGACCCTGCAGCGCACCGCACGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGc                                                                                                          <  1:756722/150‑1 (MQ=255)                                     aGGGCGGCACCATGCTCAACAAGGTGGTCTCGACCCTGCAGCGCACCGCACGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAgg                                                                                                     >  1:221392/1‑150 (MQ=255)                                        gcggcACCATGCTCAACAAGGTGGTCTCGACCCTGCAGCGCACCGCACGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCg                                                                                                  >  2:794241/1‑150 (MQ=255)                                        gcggcACCATGCTCAACAAGGTGGTCTCGACCCTGCAGCGCACCGCACGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCg                                                                                                  >  2:379071/1‑150 (MQ=255)                                        gcggcACCATGCTCAACAAGGTGGTCTCGACCCTGCAGCGCACCGCACGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCg                                                                                                  >  2:205484/1‑150 (MQ=255)                                               cATGCTCAACAAGGTGGTCTCGACCCTGCAGCGCACCGCACGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCGCTgcagc                                                                                           >  1:666280/1‑150 (MQ=255)                                                      aacaaGGTGGTCTCGACCCTGCAGCGCACCGCACGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCActtcgccagcgcccatgtcgtggctgccggcgctct                                                                                                                   >  2:613800‑M1/1‑83 (MQ=255)                                                      aacaaGGTGGTCTCGACCCTGCAGCGCACCGCACGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCActtcgccagcgcccatgtcgtggctgccggcgctct                                                                                                                   <  1:613800‑M1/119‑37 (MQ=255)                                                         aaGGTGGTCTCGACCCTGCAGCGCACCGCACGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCGCTGCAGCATGGCTGCGt                                                                                 <  2:666280/150‑1 (MQ=255)                                                                    gACCCTGCAGCGCACCGCACGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCActtcgccagcgcccatgtcgtggctgccggcgctctgg                                                                                                                 >  2:325268‑M1/1‑69 (MQ=255)                                                                    gACCCTGCAGCGCACCGCACGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCActtcgccagcgcccatgtcgtggctgccggcgctctcg                                                                                                                 <  1:325268‑M1/107‑39 (MQ=255)                                                                         tGCAGCGCACCGCACGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCGCTGCAGCATGGCTGCGTGCCAGGCACCCCGGGc                                                                 >  1:610847/1‑150 (MQ=255)                                                                         tGCAGCGCACCGCACGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCGCTGCAGCATGGCTGCGTGCCAGGCACCCCGGGc                                                                 >  2:455025/1‑150 (MQ=255)                                                                           cAGCGCACCGCACGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCGCTGCAGCATGGCTGCGTGCCAGGCACCCCGGGCTa                                                               <  2:140382/150‑1 (MQ=255)                                                                                     cacGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCgg                                                                                                                                              >  1:252621/1‑61 (MQ=255)                                                                                     cacGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCgg                                                                                                                                              <  2:252621/61‑1 (MQ=255)                                                                                        gTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCGCTGCAGCATGGCTGCGTGCCAGGCACCCCGGGCTACCGCTGGTGCTGa                                                  >  1:516062/1‑150 (MQ=255)                                                                                                 gTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCGCTGCAGCATGGCTGCGTGCCAGGCACCCCGGGCTACCGCTGGTGCTGATGGGCtttt                                         >  1:392536/1‑150 (MQ=255)                                                                                                      gtgACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCGCTGCAGCATGGCTGCGTGCCAGGCACCCCGGGCTACCGCTGGTGCTGATGGGCTTttcgttc                                    >  2:647545/1‑150 (MQ=255)                                                                                                       tgACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCGCTGCAGCATGGCTGCGTGCCAGGCACCCCGGGCTACCGCTGGTGCTGATGGGCTTttcgttcg                                   <  1:794241/150‑1 (MQ=255)                                                                                                       tgACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCGCTGCAGCATGGCTGCGTGCCAGGCACCCCGGGCTACCGCTGGTGCTGATGGGCTTttcgttcg                                   <  1:379071/150‑1 (MQ=255)                                                                                                         aCCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGTGCTGGCGAAGt                                                                                                                   >  1:458383‑M2/1‑67 (MQ=255)                                                                                                         aCCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGTGCTGGCGAAGt                                                                                                                   <  2:458383‑M2/68‑2 (MQ=255)                                                                                                           ccTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCGCTGCAGCATGGCTGCGTGCCAGGCACCCCGGGCTACCGCTGGTGCTGATGGGCTTTTCGTTCggtgg                               >  2:467913/1‑150 (MQ=255)                                                                                                                 tttCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCGCTGCAGCATGGCTGCGTGCCAGGCACCCCGGGCTACCGCTGGTGCTGATGGGCTTttcgttc                                    <  2:720736/139‑1 (MQ=255)                                                                                                                 tttCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCGCTGCAGCATGGCTGCGTGCCAGGCACCCCGGGCTACCGCTGGTGCTGATGGGCTTttcgttc                                    >  1:720736/1‑139 (MQ=255)                                                                                                                 tttCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCGCTGCAGCATGGCTGCGTGCCAGGCACCCCGGGCTACCGCTGGTGCTGATGGGCTTttc                                        <  1:633701/135‑1 (MQ=255)                                                                                                                 tttCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCGCTGCAGCATGGCTGCGTGCCAGGCACCCCGGGCTACCGCTGGTGCTGATGGGCTTttc                                        >  2:633701/1‑135 (MQ=255)                                                                                                                  ttCAACTACCGTGGCGTCGGGCAGAGCGCCGGCAGCCACGAGTTGGGCGCTGGCGAAGTCGCCGATGGCGAGACCGCTGCAGCATGGCTGCAGGCCAGGCAAACCGGGCTACCGCTGGTGCTGATGGGCTTGTCGTTCGGTGGTTTCGtt                        <  2:316574/150‑1 (MQ=255)                                                                                                                     aaCTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCGCTGCAGCATGGCTGCGTGCCAGGCACCCCGGGCTACCGCTGGTGCTGATGGGCTTTTCGTTCGGTGGTTTCGtt                        >  1:371400/1‑147 (MQ=255)                                                                                                                     aaCTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCGCTGCAGCATGGCTGCGTGCCAGGCACCCCGGGCTACCGCTGGTGCTGATGGGCTTTTCGTTCGGTGGTTTCGtt                        <  2:371400/147‑1 (MQ=255)                                                                                                                     aaCTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCGCTGCAGCATGGCTGCGTGCCAGGCACCCCGGGCTACCGCTGGTGCTGATGGGCTTTTCGTTCGGTGGTTTCGTTGcc                     >  2:504923/1‑150 (MQ=255)                                                                                                                                      cgagagcgCCGGCAGCCACGACATGGGCGCTGGCGAAGtggccgacgccacggtagttgaaacgcagggtcacataaccggcatcacgtgcggtgcgctgcagggtc                                               <  1:325268‑M2/105‑70 (MQ=255)                                                                                                                                      ccAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGtggccgacgccacggtagttgaaacgcagggtcacataaccggcatcacgtgcggtgcgctgcagggtc                                               >  2:325268‑M2/1‑38 (MQ=255)                                                                                                                                      ccAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCGCTGCAGCATGGCTGCGTGCCAGGCACCCCGGGCTACCGCTGGTGCTGATGGGCTTTTCGTTCGGTGGTTTCGTTGCCACCAGCCTGGCCGGgcg    >  2:764847/1‑150 (MQ=255)                                                                                                                                       cActtcgccagcgcccatgtcgtggctgccggcgctctggccgacgccacggtagttgaaacgcagggtcacataaccggcatcacgtgcggtgcgctgcagggtcgagaccaccttgttgagcatggtgccgccctggaccgggttggg   <  1:140382‑M1/150‑149 (MQ=255)                                                                                                                                        agagCGCCGGCAGCCACGACATGGGCGCTGGCGAAGtggccgacgccacggtagttgaaacgcagggtcacataaccggcatcacgtgcggtgcgctgcagggtcgagaccaccttgtt                                 >  2:613800‑M2/1‑36 (MQ=255)                                                                                                                                        agagCGCCGGCAGCCACGACATGGGCGCTGGCGAAGtggccgacgccacggtagttgaaacgcagggtcacataaccggcatcacgtgcggtgcgctgcagggtcgagaccaccttgtt                                 <  1:613800‑M2/119‑84 (MQ=255)                                                                                                                                        agagCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCGCTGCAGCATGGCTGCGTGCCAGGCACCCCGGGCTACCGCTGGTGCTGATGGGCTTTTCGTTCGGTGGTTTCGTTGCCACCAGCCTGGCCGGGCGcc  <  1:196690/150‑1 (MQ=255)                                                                                                                                        acttcgccagcacccatgtcgtggctgccggcgctctggccgacgccacggtagttgaaacgcagggt                                                                                    <  2:458383‑M1/68‑68 (MQ=255)                                                                                                                                        acttcgccagcacccatgtcgtggctgccggcgctctggccgacgccacggtagttgaaacgcagggt                                                                                    >  1:458383‑M1/1‑1 (MQ=255)                                                                                                                                        |                                                                                                                                                      GTGGCGCGGTGCTGATCTGCCACCCCAACCCGGTCCAGGGCGGCACCATGCTCAACAAGGTGGTCTCGACCCTGCAGCGCACCGCACGTGATGCCGGTTATGTGACCCTGCGTTTCAACTACCGTGGCGTCGGCCAGAGCGCCGGCAGCCACGACATGGGCGCTGGCGAAGTGGCCGATGCCGAGGCCGCTGCAGCATGGCTGCGTGCCAGGCACCCCGGGCTACCGCTGGTGCTGATGGGCTTTTCGTTCGGTGGTTTCGTTGCCACCAGCCTGGCCGGGCGCC  >  NC_002947/1497502‑1497786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.