New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 204730026 (0.820)4 (0.130) 4/238 NT 14.8% coding (764/1197 nt) PP_1820 benzoate transport protein
?NC_002947 = 2047339 21 (0.690)coding (725/1197 nt) PP_1820 benzoate transport protein

CACCGCCGCGGTGTAGCGTTTGGCCGGGTCTTCATGGGCATGCGGCCCGGTGCAGATCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCGG  >  NC_002947/2047155‑2047436
                                                                                                                                                 |                                                                                                                                        
cacCGCCGCGGTGTAGCGTTTGGCCGGGTCTTCATGGGCATGCGGCCCGGTGCAGATCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGc                                                                                                                                      <  1:783943/150‑1 (MQ=255)
 cccgccgCGGTGTAGCGTTTGGCCGGGTCTTCATGGGCATGCGGCCCGGTGCAGATCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGcc                                                                                                                                     <  2:208545/149‑1 (MQ=255)
    gccgcGGTGTAGCGTTTGGCCGGGTCTTCATGGGCATGCGGCCCGGTGCAGATCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGt                                                                                                                                  <  1:582865/150‑1 (MQ=255)
            gtAGCGTTTGGCCGGGTCTTCATGGGCATGCGGCCCGGTGCAGATCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTa                                                                                                                          <  1:214997/150‑1 (MQ=255)
               gCGTTTGGCCGGGTCTTCATGGGCATGCGGCCCGGTGCAGATCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGcc                                                                                                                       <  1:118562/150‑1 (MQ=255)
                   ttGGCCGGGTCTTCATGGGCATGCGGCCCGGTGCAGATCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCg                                                                                                                   <  2:116256/150‑1 (MQ=255)
                                         gCGGCCCGGTGCAGATCGCCGCGCTGCTCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCgg                                                                                             <  2:566421/150‑1 (MQ=255)
                                         gCGGCCCGGTGCACATCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCgg                                                                                             <  1:458758/150‑1 (MQ=255)
                                            gCCCGGTGCAGATCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGAAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCa                                                                                          >  2:298028/1‑150 (MQ=255)
                                                       aTCGCCGCGCTGATCGCCGCCAGGTTGGCCGCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCTGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAg                                                                               <  1:781862/150‑1 (MQ=255)
                                                       aTCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAg                                                                               <  2:99242/150‑1 (MQ=255)
                                                       aTCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGAAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAg                                                                               <  1:298028/150‑1 (MQ=255)
                                                                        cgccAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGtggccgtcctgcgtgccgacggctaccaggtaccggc                                                                                                     <  1:151193‑M1/111‑38 (MQ=255)
                                                                        cgccAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGtggccgtcctgcgtgccgacggctaccaggtaccggc                                                                                                     >  2:151193‑M1/1‑74 (MQ=255)
                                                                        cgccAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGaa                                                              >  2:117179/1‑150 (MQ=255)
                                                                          ccAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCANAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATAGCCACCACTAACa                                                            >  1:386151/1‑150 (MQ=255)
                                                                          ccAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACa                                                            >  2:182572/1‑150 (MQ=255)
                                                                               ttGACCCCATGCGAGCCGAACGGCGCCAGCACCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGCTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGa                                                       <  2:797505/150‑1 (MQ=255)
                                                                                   ccccATGCGAGCCGAAGGGCGCCACAAGCAGCGAGGCAAAGCCGGTAGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGAACCCCTTAGACGGACATGTTCTGCAACGTCATGGCCACCACGAACAGCCGAATGc                                                   <  2:335916/150‑1 (MQ=255)
                                                                                   ccccATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGc                                                   >  1:483161/1‑150 (MQ=255)
                                                                                    cccATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGtggccgtcctgcgtgccgacggctaccaggtaccggcctcgccgctga                                                                                          <  1:291060‑M1/110‑49 (MQ=255)
                                                                                    cccATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGtggccgtcctgcgtgccgacggctaccaggtaccggcctcgccgctga                                                                                          >  2:291060‑M1/1‑62 (MQ=255)
                                                                                       aTGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGAt                                               <  2:846215/150‑1 (MQ=255)
                                                                                        tGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATg                                              <  1:182572/150‑1 (MQ=255)
                                                                                             gCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGAt                                         >  1:214704/1‑150 (MQ=255)
                                                                                             gCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGAGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGAt                                         <  2:269930/150‑1 (MQ=255)
                                                                                                 aaCGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGtt                                     <  2:214704/150‑1 (MQ=255)
                                                                                                  aCGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCgg                                                                                             <  2:185971/93‑1 (MQ=255)
                                                                                                  aCGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCgg                                                                                             >  1:185971/1‑93 (MQ=255)
                                                                                                                      gCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGAATTACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTggg                <  1:438637/150‑1 (MQ=255)
                                                                                                                       cAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTgggg               <  1:350036/150‑1 (MQ=255)
                                                                                                                                    cGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCgg  >  1:555994/1‑150 (MQ=255)
                                                                                                                                         tCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCAcgccgctgatttcggccaccggctttgcctcgctgctgctggcgccgttcggctcgcatggg                                     >  2:291060‑M2/1‑48 (MQ=255)
                                                                                                                                         tCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCAcgccgctgatttcggccaccggctttgcctcgctgctgctggcgccgttcggctcgcatggg                                     <  1:291060‑M2/110‑63 (MQ=255)
                                                                                                                                                 |                                                                                                                                        
CACCGCCGCGGTGTAGCGTTTGGCCGGGTCTTCATGGGCATGCGGCCCGGTGCAGATCGCCGCGCTGATCGCCGCCAGGTTGACCCCATGCGAGCCGAACGGCGCCAGCAGCAGCGAGGCAAAGCCGGTGGCCGAAATCAGCGGCGAGGCCGGTACCTGGTAGCCGTCGGCACGCAGGACGGCCACGCCGGGCATGTTCTGCGAGGTCATGGCCACCACGAACAGCGGAATGCCGATGCTGATGGTTGCCGCCAGCGAGAAGCTTGGGGTGGTCCACACCGG  >  NC_002947/2047155‑2047436

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.