New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2048837 =	27 (0.850)	4 (0.150)	4/214	NT	19.9%	intergenic (+33/+106)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein
	?	NC_002947	2048928 =	9 (0.330)					intergenic (+124/+15)	PP_1821/PP_1822	glutathione S‑transferase family protein/hypothetical protein

CTACACCCATGTGGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAA  >  NC_002947/2048693‑2048973                                                                                                                                                 |                                                                                                                                         cTACACCCATGTGGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTtgt                                                                                                                                     <  1:197266/150‑1 (MQ=255)  ccctgcaggaaggtggcggccgggtgaaagtgccatgcctgcgcattgaagaagccggcaaggtgacctggatgtatgagtccaaggcaatcatcgcttacctggatgagcggtttgccgccatctgactgacgctgcagatcCCTtgtg                                                                                                                                    >  1:631986‑M1/144‑150 (MQ=255)        cATGTGGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCg                                                                                                                              >  2:761918/1‑150 (MQ=255)                           ggTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACgg                                                                                                           <  1:761918/150‑1 (MQ=255)                            gTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAac                                                                                                               <  2:34551/145‑1 (MQ=255)                            gTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAac                                                                                                               >  1:34551/1‑145 (MQ=255)                             ttCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCtt                                                                                                                                       >  1:279797/1‑120 (MQ=255)                             ttCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCtt                                                                                                                                       <  2:279797/120‑1 (MQ=255)                                  ccTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTCGGGTTGAAACCGACCTGTGTTGCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGc                                                                                                    <  1:744008/150‑1 (MQ=255)                                         gACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGcc                                                                                             >  1:565110/1‑150 (MQ=255)                                            gaCCCGGCGGTAAGGGCCTGGGTGGAGCGGGTCAGCAGCCACCCGGGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGGAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAac                                                                                          <  2:623493/149‑1 (MQ=255)                                              cccGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGc                                                                                                                           >  2:549722/1‑115 (MQ=255)                                              cccGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGc                                                                                                                           <  1:549722/115‑1 (MQ=255)                                               ccGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAagcac                                                                                       >  1:565558/1‑150 (MQ=255)                                               ccGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAaccac                                                                                       >  1:441953/1‑150 (MQ=255)                                                    ggTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCgg                                                                                  >  2:195843/1‑150 (MQ=255)                                                        aGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGcc                                                                              >  1:467786/1‑150 (MQ=255)                                                                 ctggAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTcgcg                                                                     <  1:11275/150‑1 (MQ=255)                                                                  tggAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCgg                                                                    <  2:565110/150‑1 (MQ=255)                                                                                  tccaaggcaatcatcgcttacctggatgagcggtttgccgccatctgactgacgctgcagatcCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGc                                                                  <  1:752324‑M1/73‑1 (MQ=255)                                                                                  tccaaggcaatcatcgcttacctggatgagcggtttgccgccatctgactgacgctgcagatcCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGc                                                                  >  2:752324‑M1/64‑136 (MQ=255)                                                                                       cgcgGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAggg                                               <  1:296951/150‑1 (MQ=255)                                                                                        gcgGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAAGCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGa                                              <  2:565558/150‑1 (MQ=255)                                                                                        gcgGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTg                                                                            >  1:330401/1‑120 (MQ=255)                                                                                        gcgGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTg                                                                            <  2:330401/120‑1 (MQ=255)                                                                                           gCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCt                                           <  2:441953/150‑1 (MQ=255)                                                                                               tcgcttacctggatgagcggtttgccgccatctgactgacgctgcatatcCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGc                                                              >  1:493798‑M1/51‑127 (MQ=255)                                                                                               tcgcttacctggatgagcggtttgccgccatctgactgacgctgcatatcCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGc                                                              <  2:493798‑M1/77‑1 (MQ=255)                                                                                                                                 cAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGgcg                                                                                                        >  2:183621/1‑51 (MQ=255)                                                                                                                                 cAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGgcg                                                                                                        <  1:183621/51‑1 (MQ=255)                                                                                                                                  aGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGt    <  1:228339/150‑1 (MQ=255)                                                                                                                                    gcgcTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTaa  >  2:513003/1‑150 (MQ=255)                                                                                                                                       cTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAg      <  2:105866/143‑1 (MQ=255)                                                                                                                                       cTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAg      >  1:105866/1‑143 (MQ=255)                                                                                                                                                 |                                                                                                                                         CTACACCCATGTGGCGCAGCAGGGCGGGTTCGACCTGGCAGACTACCCGGCGGTAAGGGCCTGGCTGGAGCGGGTCAGCAGCCACCCGCGGCATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAA  >  NC_002947/2048693‑2048973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.