New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2651871	36 (1.140)	4 (0.130)	4/240	NT	11.6%	coding (590/1113 nt)	aroF‑I	tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase
	?	NC_002947	= 2651909	26 (0.850)					coding (552/1113 nt)	aroF‑I	tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase

GCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTGTTTGCGATTCGGTGGTGCGGGCACCGATGGCCGACCAGCTGATCAGGTCTTGCAGGTACTGCGGCGAAATCGGGTCGAGCGCTTCGGTGGCGGTCGGCAGGCCCATT  >  NC_002947/2651722‑2652017                                                                                                                                                      |                                                                                                                                                   gcAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAAC                                                                                                                                                    >  2:171296‑M1/1‑150 (MQ=255)   tgTACAACGTGGTGGTATGGGTTGCCCTTGGTGGGGACGATCGACACGCCGCCTTCGTGGTTGATGCCGAGGAGGCGGTGCGGTTTGGACACCGACTGCAGGGCATTGATGGCAACGGGCAGGCGGCCATCGGTACCGTTCTTGAAAccc                                                                                                                                                  <  2:376782/149‑1 (MQ=255)                 gTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAg                                                                                                                                    <  2:598342/150‑1 (MQ=255)                        ttGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAg                                                                                                                             <  2:526132/150‑1 (MQ=255)                          gCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGc                                                                                                                           <  2:807372/150‑1 (MQ=255)                            ccTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGGCTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCa                                                                                                                         >  1:487323/1‑150 (MQ=255)                                   ggtgACGATCGACACGCCGCCTTCCTGGTTGATGCCCCGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTcgcg                                                                                                                  <  1:473369/150‑1 (MQ=255)                                   ggtgACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTcgcg                                                                                                                  <  2:731080/150‑1 (MQ=255)                                   ggtgACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTagcg                                                                                                                  >  2:685196/1‑150 (MQ=255)                                   ggtgACGATCGACACGCCGCCTTCCTGGTTGATGCCCAAAAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTcgcg                                                                                                                  <  1:473119/150‑1 (MQ=255)                                           tCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTgttt                                                                                                          >  1:235069‑M2/1‑146 (MQ=255)                                                acGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCgg                                                                                                                 <  1:286873/138‑1 (MQ=255)                                                acGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTAATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCgg                                                                                                                 >  2:286873/1‑138 (MQ=255)                                                     gccTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACacaccgcgagatggcctcgggcctgtcctcggcggtgggttt                                                                                                          <  2:580499‑M1/140‑43 (MQ=255)                                                     gccTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACacaccgcgagatggcctcgggcctgtcctcggcggtgggttt                                                                                                          >  1:580499‑M1/1‑98 (MQ=255)                                                      ccTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTGTTTGCGATTCggtg                                                                                               <  2:403632/150‑1 (MQ=255)                                                         tCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACacaccgcgagatggcctcgggcctgtcctcggcggtgggtttca                                                                                                        >  1:343749‑M1/1‑94 (MQ=255)                                                         tCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACacaccgcgagatggcctcgggcctgtcctcggcggtgggtttca                                                                                                        <  2:343749‑M1/138‑45 (MQ=255)                                                         tCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTGTTTGCGATTCGgtggtg                                                                                            >  2:366903/1‑150 (MQ=255)                                                           cTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTGTTTGCGATTCGGTGGTGCg                                                                                          <  2:134052/150‑1 (MQ=255)                                                               ttGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGGCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTGTTTGCGATTCGGTGGTGCGGGCa                                                                                      >  1:386024/1‑150 (MQ=255)                                                                    gCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTGTTTGCGATTCGGTGGTGAGGGCACCGAt                                                                                 <  1:366903/150‑1 (MQ=255)                                                                      ccAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTGTTTGCGATTc                                                                                                   <  2:724586/130‑1 (MQ=255)                                                                      ccAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTGTTTGCGATTc                                                                                                   >  1:724586/1‑130 (MQ=255)                                                                       cAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGccc                                                                                                                                <  2:254136/100‑1 (MQ=255)                                                                       cAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGccc                                                                                                                                >  1:254136/1‑100 (MQ=255)                                                                                     gCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTGTTTGCGATTCGGTGGTGCGGGCACCGATGGCCGACCAGCTGATCa                                                                >  1:68246/1‑150 (MQ=255)                                                                                             acCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTGTTTGCGATTCGGTGGTGCGGGCACCGATGGCCGACCAGCTGATCAGGTCTTGc                                                        >  1:648237/1‑150 (MQ=255)                                                                                             acCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTGTTTGCGATTCGGTGGTGCGGGCACCGATGGCCGACCAGCTGATCAGGTCTTGc                                                        >  1:212584/1‑150 (MQ=255)                                                                                                gACTGCAGGGCATTGATGGCAACGGTCAGGCCGCTATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTGTTTGCGATTCGGTGGTGCGGGCACCGATGGCCGACCAGCTGATCAGGTCTTGCAgg                                                     <  1:728837/150‑1 (MQ=255)                                                                                                     cAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTGTTTGCGATTCGGTGGTGCGGGCACCGATGGCCGACCAGCTGATCAGGTCTTGCAGGTACTg                                                <  1:175282/150‑1 (MQ=255)                                                                                                     cAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTGTTTGCGATTCGGTGGTGCGGGCACCGATGGCCGACCAGCTGATCAGGTCTTGCAGGTACTg                                                >  2:693974/1‑150 (MQ=255)                                                                                                         gCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCGCGCGGTGTGTTTGCGATTCGGTGGTGCGGGCACCGATGGCCGACCAGCTGATCAGGTCTTGCAGGTACTgcggc                                            <  1:275241/150‑1 (MQ=255)                                                                                                                 ggCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTGCTGGCGATTCGGTGGTGCGGGCACCGATGGCCGACCAGCTGATCAGGTCTTGCAGGTACTGCGGCGAAATCgg                                    <  2:761734/150‑1 (MQ=255)                                                                                                                    aaCGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGACGACAGGCCCGAGGCCATCTCGCGGTGTGTTTGCGATTCGGTGGTGCGGGCACCGATGGCCGACCAGCTGATCAGGTCTTGCAGGTACTGCGGCGAAATCGGGTc                                 >  1:835326/1‑150 (MQ=255)                                                                                                                      cGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTGTTTGCGATTCGGTGGTGCGGGCACCGATGGCCGACCAGCTGATCAGGTCTTGCAGGTACTGCGGCGAAATCGGGTCGa                               <  2:212584/150‑1 (MQ=255)                                                                                                                        gTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGACCCCGGGCATCTCGCGGTGTGTTTGCGATTCGGTGGTGCGGGCACCGATGGCCGACCAGCTGATCAGGTCTTGCAGGTACTGCGGCGAAATCGGGTCGAgc                             >  2:634528/1‑150 (MQ=255)                                                                                                                           aGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTGTTTGCGATTCGGTGGTGCGGGCACCGATGGCCGACCAGCTGATCAGGTCTTGCAGGTACTGCGGCGAAATCGGGTCGAGCGCt                          <  1:693974/150‑1 (MQ=255)                                                                                                                              ccgccATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTGTTTGCGATTCGGTGGTGCGGGCACCGATGGCCGACCAGCTGATCAGGTCTTGCAGGTACTGCGGCGAAATCGGGTCGAGCGCTTCg                       <  2:386024/150‑1 (MQ=255)                                                                                                                               cgccATCGGTACCGTTCTTGAAACCCACGGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTGTTTGCCATTACGTGGTGCGGGCACAACTGGCTCATATGCTGGTATCGCATTGCAGTTTCTGCGGCGAAAGCGGGTGGTGCGTTTCgg                      <  2:8821/150‑1 (MQ=255)                                                                                                                                gccATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTGTTTGCGATTCGGTGGTGCGGGCACCGATGGCCGACCAGCTGATCAGGTCTTGCAGGTACTGCGGCGAAATCGGGTCGAGCGCTTCGGt                     <  1:171296/150‑1 (MQ=255)                                                                                                                                    tCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTGTTTGCGATTCGGTGGTGCGGGCACCGATGGCCGACCAGCTGATCAGGTCTTGCAGGTACTGCGGCGAAATCGGGTCGAGCGCTTCGGTGGCg                 <  2:678829/150‑1 (MQ=255)                                                                                                                                             ttCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTGTTTGCGATTCGGTGGTGCGGGCACCGCTGAGCTTCATCCTGATCAGGTCTTGCAGGTACTGCGGCGAAATCGGGTCGAGCGCTTCGGTGGCGGTCGGCAgg        >  1:149373/1‑150 (MQ=255)                                                                                                                                                 tGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTgtttcaagaacggtaccgatggcggcctgaccgttgccatcaatgccctgcagtcggtgtccaagccgcaccgcttcctgggcatcaaccagga                <  2:343749‑M2/138‑95 (MQ=255)                                                                                                                                                 tGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTgtttcaagaacggtaccgatggcggcctgaccgttgccatcaatgccctgcagtcggtgtccaagccgcaccgcttcctgggcatcaaccagga                >  1:343749‑M2/1‑44 (MQ=255)                                                                                                                                                   aaaCacaccgcgagatggcctcgggcctgtcctcggcggtgggtttcaagaacggtaccgatggcggcctgaccgttgccatcaatgccctgcagtcggtgtccaagccgcaccgcttcctgggcatcaaccaggaaggcggcgtgtcga  >  1:235069‑M1/1‑4 (MQ=255)                                                                                                                                                   aaaCCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTgtttcaagaacggtaccgatggcggcctgaccgttgccatcaatgccctgcagtcggtgtccaagccgcaccgcttcctgggcatcaaccaggaaggc            <  2:580499‑M2/140‑99 (MQ=255)                                                                                                                                                   aaaCCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTgtttcaagaacggtaccgatggcggcctgaccgttgccatcaatgccctgcagtcggtgtccaagccgcaccgcttcctgggcatcaaccaggaaggc            >  1:580499‑M2/1‑42 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GCAGTACCACGTGGCCGTATGGGTTGCCCTTGGTGGTGACGATCGACACGCCGCCTTCCTGGTTGATGCCCAGGAAGCGGTGCGGCTTGGACACCGACTGCAGGGCATTGATGGCAACGGTCAGGCCGCCATCGGTACCGTTCTTGAAACCCACCGCCGAGGACAGGCCCGAGGCCATCTCGCGGTGTGTTTGCGATTCGGTGGTGCGGGCACCGATGGCCGACCAGCTGATCAGGTCTTGCAGGTACTGCGGCGAAATCGGGTCGAGCGCTTCGGTGGCGGTCGGCAGGCCCATT  >  NC_002947/2651722‑2652017

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.