New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2775344 =	34 (1.070)	6 (0.200)	5/236	NT	15.7%	coding (211/1353 nt)	PP_5521	hypothetical protein
	?	NC_002947	2775369 =	32 (1.060)					coding (186/1353 nt)	PP_5521	hypothetical protein

ATGCGGGCCAGCAGGCTGCCATCTTCCAGCAGCAGGACATGGCTGATGCCTTGGCCGTGGTCTTCGAGCAACGGTATCAAGGGGTGGTGTGCGGGTGGCCAGGCCTTGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTCGAGGTTGTCCCAGCCGTGCGCACGGCCCTGCGCGACGTAGTCGTTGACGGCCTGGGCATAGGCGATGACTGCCTGCTGCC  >  NC_002947/2775196‑2775490                                                                                                                                                     |                                                                                                                                                   aTGCGGGCCAGCAGGCTGCCATCTTCCAGCAGCAGGACATGGCTGATGCCTTGGCCGTGGTCTTCGAGCAACGGTATCAAGGGGTGGTGTGCGGGTGGCCAGGCCTTGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTg                                                                                                                                                   >  1:138158/1‑150 (MQ=255)  tGCGGGCCAGCAGGCTGCCATCTTCCAGCAGCAGGACATGGCTGATGCCTTGGCCGTGGTCTTCGAGCAACGGTATCAAGGGGTGGTGTGCGGGTGGCCAGGCCTTGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTgg                                                                                                                                                  >  1:25415/1‑150 (MQ=255)  gacaagcaagacccccagcagcagtggcagcaggcagtcatcgcctatgcccaggccgtcaacgactacgtcgcgcagggccgtgcgcacggctgggacaacctcgaagagccgcaggcacccgccaccgaacacctgctcgacgccTgg                                                                                                                                                  >  1:800324‑M1/148‑150 (MQ=255)     gggCCAGCAGGCTGCCATCTTCCAGCAGCAGGACATGGCTGATGCCTTGGCCGTGGTCTTCGAGCAACGGTATCAAGGGGTGGTGTGCGGGTGGCCAGGCCTTGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGctg                                                                                                                                               <  1:6605/150‑1 (MQ=255)           gcagGCTGCCATCTTCCAGCAGCAGGACATGGCTGATGCCTTGGCCGTGGTCTTCGAGCAACGGTATCAAGGGGTGGTGTGCGGGTGGCCAGGCCTTGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTCGctgctttct                                                                                                                                         <  2:426096/150‑6 (MQ=255)            aaagCTGCCATCTTCCAACAGCACGACATGGCTGATGCCTTGGCCGTGGTCTTCGAACAACGGTATCAAGGGGTGGTGTGCGGGTGGCCAGGCCTTGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAg                                                                                                                                        <  2:138158/147‑1 (MQ=255)                 tGCCATCTTCCAGCAGCAGGACATGGCTGATGCCTTGGCCGTGGTCTTCGAGCAACGGTATCAAGGGGTGGTGTGCGGGTGGCCAGGCATTGCGGAATGCCTGGCGCTGCTGTTCGGCGACGCC‑‑‑‑‑‑‑‑TGGCTGCCTGCAGGGCTGACAGCCAg                                                                                                                           <  1:368800/150‑1 (MQ=255)                  gCCATCTTCCAGCAGCAGGACATGGCTGATGCCTTGGCCGTGGTCTTCGAGCAACGGTATCAAGGGGTGGTGTGCGGGTGGCCAGGCCTTGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGa                                                                                                                                  <  1:182372/150‑1 (MQ=255)                                gcagGACATGGCTGATGCCTTGGCCGTGGTCTTCGAGCAACGGTATCAAGGGGTGGTGTGCGGGTGGCCAGGCCTTGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGa                                                                                                                    >  1:317194/1‑150 (MQ=255)                                     aCATGGCTGATGCCTTGGCCGTGGTCTTCGAGCAACGGTATCAAGGGGTGGTGTGCGGGTGGCCAGGCCTTGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAgg                                                                                                               >  1:382148/1‑150 (MQ=255)                                             cctatgcccaggccgtcaacgactacgtcgcgcagggccgtgcgcacggctgggacaacctcgaagagccgcaggcacccgccaccgaacacctgctcgacgccTGGc                                                                                                                                                 <  2:56172‑M1/4‑1 (MQ=255)                                             cctatgcccaggccgtcaacgactacgtcgcgcagggccgtgcgcacggctgggacaacctcgaagagccgcaggcacccgccaccgaacacctgctcgacgccTGGc                                                                                                                                                 >  1:56172‑M1/105‑108 (MQ=255)                                                  cTTGGCCGTGGTCTTCGAGCAACGGTATCAAGGGGTGGTGTGCGGGTGGCCAGGCCTTGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCgg                                                                                                  >  2:242837/1‑150 (MQ=255)                                                               ttCGAGCAACGGTATCAAGGGGTGGTGTGCGGGTGGCCAGGCCTTGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGctc                                                                                     >  1:335858/1‑150 (MQ=255)                                                                  gAGCAACGGTATCAAGGGGTGGTGTGCGGGTGGCCAGGCCTTGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTc                                                                                  >  1:165995/1‑150 (MQ=255)                                                                       gtcgcgcagggccgtgcgcacggctgggacaacctcgaagagccgcaggcacccgccaccgaacacctgctcgacgccTGGCTGCCTGCAGGGCTGACa                                                                                                                                >  2:217171‑M1/79‑99 (MQ=255)                                                                       gtcgcgcagggccgtgcgcacggctgggacaacctcgaagagccgcaggcacccgccaccgaacacctgctcgacgccTGGCTGCCTGCAGGGCTGACa                                                                                                                                <  1:217171‑M1/21‑1 (MQ=255)                                                                        cGGTATCAAGGGGTGGTGTGCGGGTGGCCAGGCCTTGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTCGAGGtt                                                                            >  2:819470/1‑150 (MQ=255)                                                                                   ggtggtGTGCGGGTGGCCAGGCCTTGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTCGAGGTTGTCCCAGCCGt                                                                 >  2:586696/1‑150 (MQ=255)                                                                                          acggctgggacaacctcgaagagccgcaggcacccgccaccgaacacctgctcgacgccTGGCTGCCTGCAGGGCTGACAGCCa                                                                                                                            >  1:456028‑M1/60‑84 (MQ=255)                                                                                          acggctgggacaacctcgaagagccgcaggcacccgccaccgaacacctgctcgacgccTGGCTGCCTGCAGGGCTGACAGCCa                                                                                                                            <  2:456028‑M1/25‑1 (MQ=255)                                                                                           gCGGGTGGCCAGGCCTTGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGGCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTCGAGGTTGTCCCAGCCGTGCGCACgg                                                         <  2:25415/150‑1 (MQ=255)                                                                                              ggTGGCCAGGCCTTGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTCGAGGTTGTCCCAGCCGTGCGCACGGctg                                                      <  2:317194/150‑3 (MQ=255)                                                                                                  gCCAGGCCTTGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGt                                                                                                <  2:360538/104‑1 (MQ=255)                                                                                                  gCCAGGCCTTGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGt                                                                                                >  1:360538/1‑104 (MQ=255)                                                                                                  gCCAGGCCTTGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGc                                                                                              <  2:125186/106‑1 (MQ=255)                                                                                                  gCCAGGCCTTGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGc                                                                                              >  1:125186/1‑106 (MQ=255)                                                                                                   ccAGGCATTCCGCAAGGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTCGAgg                                                                              >  1:652194/1‑121 (MQ=255)                                                                                                   ccAGGCATTCCGCAAGGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTCGAgg                                                                              <  2:652194/121‑1 (MQ=255)                                                                                                      ggCCTTGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTCGAGGTTGTCCCAGCCGTGCGCACGGCCCTGCGCGAc                                              <  2:130990/150‑1 (MQ=255)                                                                                                      ggCCTTGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTCGAGGTTGTCCCAGCCGTGCGCACGGCCCTGCGCGAc                                              <  2:702926/150‑1 (MQ=255)                                                                                                        ctcgaagagccgcaggcacccgccaccgaacacctgctcgacgccTGGCTGCCTGCAGGGCTGACAGCCa                                                                                                                            >  1:373916‑M1/46‑70 (MQ=255)                                                                                                        ctcgaagagccgcaggcacccgccaccgaacacctgctcgacgccTGGCTGCCTGCAGGGCTGACAGCCa                                                                                                                            <  2:373916‑M1/25‑1 (MQ=255)                                                                                                          ttGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTCGAGGTTGTCCCCGCCGTGCGCACGGCCCTGCGCGACGTAg                                          >  1:114122/1‑150 (MQ=255)                                                                                                            gCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTCGAGGTTGTCCCAGCCGTGCGCACgg                                                         >  2:98730/1‑133 (MQ=255)                                                                                                            gCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTCGAGGTTGTCCCAGCCGTGCGCACgg                                                         <  1:98730/133‑1 (MQ=255)                                                                                                            gCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTCGAGGTTGTCCCAGCCGTGCGCACGGCCCTGCGCGACGTAGTc                                        <  1:242837/150‑1 (MQ=255)                                                                                                              ggAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTCGAGGTTGTCCCAGACGTGCCAACGGCCATGCGCGACGTAGTCGt                                      <  2:480692/150‑1 (MQ=255)                                                                                                               gAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTCGAGGTTGTCCCAGCCGTGCGCACGGCCCTGCGCGACGTAGTCGtt                                     <  2:114122/150‑1 (MQ=255)                                                                                                                               tgTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTCGAGGTTGTCCCAGCCGTGCGCACGGCCCTGCGCGACGTAGTCGTTGACGGCCTGGGCATAg                     <  1:586696/150‑1 (MQ=255)                                                                                                                                       gACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTCGAGGTTGTCCCAGCCGTGCGCACGGCCCTGCGCGACGTAGTCGTTGACGGCCTGGGCATAGGCGATGAc             >  1:159012/1‑150 (MQ=255)                                                                                                                                        aCGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTCGAGGTTGTCCCAGCCGTGCGCACGGCCCTGCGCGACGTAGTCGTTGACGGCCTGGGCATAGGCGATGAct            <  2:382148/150‑1 (MQ=255)                                                                                                                                            cAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTCGAGGTTGTCCCAGCCGTGCGCACGGCCCTGCGCGACGTAGTCGTTGACGGCCTGGGCATAGGCGATGActgcct        <  1:765818/150‑1 (MQ=255)                                                                                                                                               gACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTCGAGGTTGTCCCAGCCGTGCGCACGGCCCTGCGCGACGTAGTCGTTGAc                                  <  2:318863/121‑1 (MQ=255)                                                                                                                                               gACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTCGAGGTTGTCCCAGCCGTGCGCACGGCCCTGCGCGACGTAGTCGTTGAc                                  >  1:318863/1‑121 (MQ=255)                                                                                                                                                  ggTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTCGAGGTTGTCCCAGCCGTGCGCACGGCCCTGCGCGACGTAGTCGTTGACGGCCTGGGCATAGGCGATGACTGCCTGCTGcc  <  2:159012/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   ATGCGGGCCAGCAGGCTGCCATCTTCCAGCAGCAGGACATGGCTGATGCCTTGGCCGTGGTCTTCGAGCAACGGTATCAAGGGGTGGTGTGCGGGTGGCCAGGCCTTGCGGAATGCCTGGCGCTGCTGTTCGTCGACGCCAGGACGGTTGGCTGCCTGCAGGGCTGACAGCCAGGCGTCGAGCAGGTGTTCGGTGGCGGGTGCCTGCGGCTCTTCGAGGTTGTCCCAGCCGTGCGCACGGCCCTGCGCGACGTAGTCGTTGACGGCCTGGGCATAGGCGATGACTGCCTGCTGCC  >  NC_002947/2775196‑2775490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.