New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2807755	21 (0.660)	4 (0.130)	4/238	NT	14.8%	coding (68/213 nt)	PP_2461	hypothetical protein
	?	NC_002947	= 2807768	26 (0.860)					coding (55/213 nt)	PP_2461	hypothetical protein

CTGCTCAGTGCCCGTCTGGCGCGATTGGAATAGCCGCGTGCGGCGCGTAGCGCTCGAACACCTGGTCGATGAAGCTGCGTGCCGCCTCGGCACCGTTGTCGCGCACCAACAGGTCGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGACCTTGATGTCGGCATCGATGCTGTGGGTGCTCATGAAAAGCTCTCGCTAGGGGCCCGGAACGAAGGAGGAACACCTGACCCTGGTGTTCGATGGAGGCGGGATGCGCTCCACTTC  >  NC_002947/2807606‑2807903                                                                                                                                                      |                                                                                                                                                     cTGCTCAGTGCCCGTCTGGCGCGATTGGAATAGCCGCGTGCGGCGCGTAGCGCTCGAACACCTGGTCGATGAAGCTGCGTGCCGCCTCGGCACCGTTGTCGCGCACCAACAGGTCGATGGCGATCAGCCCCAACCCTGGGGGTGTGTCAG                                                                                                                                                      >  2:22076‑M1/1‑150 (MQ=255)   gCTCAGTGCCCGTCTGGCGCGATTGGAATAGCCGCGTGCGGCGCGTAGCGCTCGAACACCTGGTCGATGAAGCTGCGTGCCGCCTCGGCACCGTTGTCGCGCACCAACAGGTCGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAggg                                                                                                                                                    >  1:279413/1‑150 (MQ=255)   gCTCAGTGCCCGTCTGGCGCGATTGGAATAGCCGCGTGCGGCGCGTAGCGCTCGAACACCTGGTCGATGAAGCTGCGTGCCGCCTCGGCACCGTTGTCGCGCACCAACAGGTCGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAggg                                                                                                                                                    <  1:688102/150‑1 (MQ=255)      cAGTGCCCGTCTGGCGCGATTGGAATAGCCGCGTGCGGCGCGTAGCGCTCGAACACCTGGTCGATGAAGCTGCGTGCCGCCTCGGCACCGTTGTCGCGCACCAACAGGTCGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAGGGCTg                                                                                                                                                 >  1:238533/1‑150 (MQ=255)       aGTGCCCGTCTGGCGCGATTGGAATAGCCGCGTGCGGCGCGTAGCGCTCGAACACCTGGTCGATGAAGCTGCGTGCCGCCTCGGCACCGTTGTCGCGCACCAACAGGTCGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAGGGCTGt                                                                                                                                                >  2:117978/1‑150 (MQ=255)                         ttGGAATAGCCGCGTGCGGCGCGTAGCGCTCGAACACCTGGTCGATGAAGCTGCGTGCCGCCTCGGCACCGTTGTCGCGCACCAACAGGTCGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAGGGCTGTACGCGCTCTGGCCCTCgg                                                                                                                              <  2:738329/150‑1 (MQ=255)                         ttGGAATAGCCGCGTGCGGCGCGTAGCGCTCGAACACCTGGTCGATGAAGCTGCGTGCCGCCTCGGCACCGTTGTCGCGCACCAACAGGTCGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAGGGCTGTACGCGCTCTGGCCCTCgg                                                                                                                              <  2:573005/150‑1 (MQ=255)                                   cgcgTGCGGCGCGTAGCGCTCGAACACCTGGTCGATGAAGCTGCGTGCCGCGTCGGCACCGTTGTCGCGCACCAACAGGTCGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGAc                                                                                                                    <  1:750309/150‑1 (MQ=255)                                   cgcgTGCGGCGCGTAGCGCTCGAACACCTGGTCGATGAAGCTGCGTGCCGCCTCGGCACCGTTGTCGCGCACCAACAGGTCGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGAc                                                                                                                    <  1:547994/150‑1 (MQ=255)                                       tGCGGCGCGTAGCGCTCGAACACCTGGTCGATGAAGCTGCGGGCCGCCTCGGCACCGTTGTCGCGCACCAACAGGTCGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGACCTTg                                                                                                                <  2:602072/150‑1 (MQ=255)                                                tAGCGCTCGAACACCTGGTCGATGAAGCTGCGTGCCGCCTCGGCACCGTTGTCGCGCACCAACAGGTCGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGACCTTGATGTCGGCa                                                                                                       <  2:591319/150‑1 (MQ=255)                                                  gcgcTCGAACACCTGGTCGATGAAGCTGCGTGCCGCCTCGGCACCGTTGTCGCGCACCAACAGATTTATTGCGATCAGAAACAACTCTTCCGGTGTGCCAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGACCTTGATGTCGGCATc                                                                                                     <  1:278080/150‑1 (MQ=255)                                                     cTCGAACACCTGGTCGATGAAGCTGCGTGCCGCCTCGGCACCGTTGTCGCGCACCAACAGGTCGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGACCTTGATGTCGGCATCGAt                                                                                                  <  1:241793/150‑1 (MQ=255)                                                        gAACACCTGGTCGATGAAGCTGCGTGCCGCCTCGGCACCGTTGTCGCGCACCAACAGGTCGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGACCTTGATGTCGGCATCGATGCt                                                                                               <  2:279413/150‑1 (MQ=255)                                                            acCTGGTCGATGAAGCTGCGTGCCGCCTCGGCACCGTTGTCGCGCACCAACAGGTCGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGACCTTGATGTCGGCATCGATGCTGTgg                                                                                           <  2:238533/150‑1 (MQ=255)                                                                                    gccTCGGCACCGTTGTCGCGCACCAACAGGTCGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAGagcgcgtacagccctgg                                                                                                                                     <  1:746388‑M1/84‑18 (MQ=255)                                                                                    gccTCGGCACCGTTGTCGCGCACCAACAGGTCGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAGagcgcgtacagccctgg                                                                                                                                     >  2:746388‑M1/1‑67 (MQ=255)                                                                                    gccTCGGCACCGTTGTCGCGCACCAACAGGTCGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGACCTTGATGTCGGCATCGATGCTGTGGGTGCTCATGAAAAGCTCTCGCTAg                                                                   <  1:693589/150‑1 (MQ=255)                                                                                                ttGTCGCGCACCAACAGGTCGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGACCTTGATGTCGGCATCGATGCTGTGGGTGCTCATGAAAAGCTCTCGCTAGGGGCCCGGAACg                                                       <  2:544570/150‑1 (MQ=255)                                                                                                   tCGCGCACCAACAGGTCGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGACCTTGATGTCGGCATCGATGCTGTGGGTGCTCATGAAAAGCTCTCGCTAGGGGCCCGGAACGAag                                                    >  1:388087/1‑150 (MQ=255)                                                                                                      cggaCCAACAGGTCGATGGCGATCAGCAGCAACTCTCAGTCGGTGCCAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGACCTTGATGTCGGCATCGATGCTGTGGGTGCTCATGAAAAGCTCTCGCTAGGGGCCCGGAACGAaggag                                                 <  1:225505/147‑1 (MQ=255)                                                                                                      cgcACCAACAGGTCGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGACCTTGATGTCGGCATCGATGCTGTGGGTGCTCATGAAAAGCTCTCGCTAGGGGCCCGGAACGAaggag                                                 <  2:713499/150‑1 (MQ=255)                                                                                                           cAACAGGTCGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAGagcgcgtacagccctg                                                                                                                                      >  2:170816‑M1/1‑44 (MQ=255)                                                                                                           cAACAGGTCGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAGagcgcgtacagccctg                                                                                                                                      <  1:170816‑M1/60‑17 (MQ=255)                                                                                                                   cGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGACCTTGATGTCGGCATCGATGCTGTGGGTGCTCATGAAAAGCTCTCGCTAGGGGCCCGGAACGAAGGAGGAACACCTGAccc                                    >  2:123982/1‑150 (MQ=255)                                                                                                                     aTGGCGATCAGCAGCAACTCTTCCGGTGTGCCAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGACCTTGATGTCGGCATCGATGCTGTGGGTGCTCATGAAAAGCTCTCGCTAGGGGCCCGGAACGAAGGAGGAACACCTGACCCTg                                  <  1:330814/150‑1 (MQ=255)                                                                                                                           aTCAGCAGCAACTCTTCCGGTGTGCCAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGACCTTGATGTCGGCATCGATGCTGTGGGTGCTCATGAAAAGCTCTCGCTAGGGGCCCGGAACGAAGGAGGAACACCTGACCCTGGTGTTc                            <  1:117978/150‑1 (MQ=255)                                                                                                                                  gcaACTCTTCCGGTGTGCCAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGACCTTGATGTCGGCATCGATGCTGTGGGTGCTCATGAAAAGCTCTCGCTAGGGGCCCGGAACGAAGGAGGAACACCTGACCCTGGTGTTCGATGGAg                     >  1:665719/1‑150 (MQ=255)                                                                                                                                  gcaACTCTTCCGGTGTGCCAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGACCTTGATGTCGGCATCGATGCTGTGGGTGCTCATGAAAAGCTCTCGCTAGGGGCCCGGAACGAAGGAGGAACACCTGACCCTGGTGTTCGATGGAg                     >  2:621676/1‑150 (MQ=255)                                                                                                                                                  gCCAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGACCTTGATGTCGGCATCGATGCTGTGGGTGCTCATGAAAAGCTCTCGCTAGGGGCCCGGAACGaa                                                     >  2:267066/1‑102 (MQ=255)                                                                                                                                                  gCCAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGACCTTGATGTCGGCATCGATGCTGTGGGTGCTCATGAAAAGCTCTCGCTAGGGGCCCGGAACGaa                                                     <  1:267066/102‑1 (MQ=255)                                                                                                                                                   ccAGGGCTGTACGCGCTctggcacaccggaagagttgctgctgatcgccatcgacctgttggtgcgcgacaacggtgccgaggc                                                                      <  1:746388‑M2/84‑68 (MQ=255)                                                                                                                                                   ccAGGGCTGTACGCGCTctggcacaccggaagagttgctgctgatcgccatcgacctgttggtgcgcgacaacggtgccgaggc                                                                      >  2:746388‑M2/1‑17 (MQ=255)                                                                                                                                                   ccAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGACCTTGATGTCGGCATCGATGCTGTGGGTGCTCATGAAAAGCTCTCGCTAGGGGCCCGGAACGAAGGAGGAACACCTGACCCTGgt                                >  2:102456/1‑122 (MQ=255)                                                                                                                                                   ccAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGACCTTGAGGTCGGCATCGATGCTGTGGGTGCTCATGAAAAGCTCTCGCTAGGGGCCCGGAACGAAGGAGGAACACCTGACCCTGgt                                <  1:102456/122‑1 (MQ=255)                                                                                                                                                    cAGGGCTGTACGCGCTctggcacaccggaagagttgctgctgatcgccatcgacctgttg                                                                                             >  2:170816‑M2/1‑16 (MQ=255)                                                                                                                                                    cAGGGCTGTACGCGCTctggcacaccggaagagttgctgctgatcgccatcgacctgttg                                                                                             <  1:170816‑M2/60‑45 (MQ=255)                                                                                                                                                     aGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGACCTTGATGTCGGCATCGATGCTGTGGGTGCTCATGAAAAGCTCTCGCTAGGGGCCCGGAACCAAGGAGGAACACCTGACCCTGGTGTTCGATGGAGGCGGGATGCGCTCCActtc  <  1:22076/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     CTGCTCAGTGCCCGTCTGGCGCGATTGGAATAGCCGCGTGCGGCGCGTAGCGCTCGAACACCTGGTCGATGAAGCTGCGTGCCGCCTCGGCACCGTTGTCGCGCACCAACAGGTCGATGGCGATCAGCAGCAACTCTTCCGGTGTGCCAGGGCTGTACGCGCTCTGGCCCTCGGCCCATTTGACCTTGATGTCGGCATCGATGCTGTGGGTGCTCATGAAAAGCTCTCGCTAGGGGCCCGGAACGAAGGAGGAACACCTGACCCTGGTGTTCGATGGAGGCGGGATGCGCTCCACTTC  >  NC_002947/2807606‑2807903

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.