New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2876327 =	39 (1.230)	4 (0.130)	4/236	NT	11.1%	coding (77/258 nt)	PP_2530	hypothetical protein
	?	NC_002947	2876371 =	27 (0.900)					coding (33/258 nt)	PP_2530	hypothetical protein

CTTGGTGGCGGCGCTGGTATCCGCCTTGTCGGGTTGCTGGATGTTCATGCCGCCGGGAGGTGGCGGTGGTCATGGTGGGGGTGGCCACGGCGGTGGTTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCATGCACATTGGTCGCCCGAACCGCGCGTGGCACAGCGCCGGTGTTTGCGCCTTAGGGCATGCAGGATGATGCGCTGATCGGCAGTTGATCCTGCTT  >  NC_002947/2876178‑2876466                                                                                                                                                      |                                                                                                                                            cTTGGTGGCGGCGCTGGTATCCGCCTTGTCGGGTTGCTGGATGTTCATGCCGCCGGGAGGTGGCGGTGGTCATGGTGGGGGTGGCCACGGCGGTGGTTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACcg                                                                                                                                             >  2:598239/1‑150 (MQ=255)    ggtggCGGCGCTGGTATCCGCCTTGTCGGGTTGCTGGATGTTCATGCCGCCGGGAGGTGGCGGTGGTCATGGTGGGGGTGGCCACGGCGGTGGTTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCgcgc                                                                                                                                          >  2:337941/1‑150 (MQ=255)    ggtggCGGCGCTGGTATCCGCCTTGTCGGGTTGCTGGATGTTCATGCCGCCGGGAGGTGGCGGTGGTCATGGTGGGGGTGGCCACGGCGGTGGTTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCgcgc                                                                                                                                          <  1:521654/150‑1 (MQ=255)           gcgcTGGTATCCGCCTTGTCGGGTTGCTGGATGTTCATGCCGCCGGGAGGTGGCGGTGGTCATGGTGGGGGTGGCCACGGCGGTGGTTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCg                                                                                                                                   <  2:832808/150‑1 (MQ=255)           gcgcTGGTATCCGCCTTGTCGGGTTGCTGGATGTTCATGCCGCCGGGAGGTGGCGGTGGTCATGGTGGGGGTGGCCACGGCGGTGGTTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCg                                                                                                                                   <  1:337941/150‑1 (MQ=255)              cTGGTATCCGCCTTGTCGGGTTGCTGGATGTTCATGCCGCCGGGAGGTGGCGGTGGTCATGGTGGGGGTGGCCACGGCGGTGGTTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGcc                                                                                                                                <  1:598239/150‑1 (MQ=255)                ggTATCCGCCTTGTCGGGTTGCTGGATGTTCATGCCGCCGGGAGGTGGCGGTGGTCATGGTGGGGGTGGCCACGGCGGTGGTTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCgg                                                                                                                              >  1:231166/1‑150 (MQ=255)                 gTATCCGCCTTGTCGGGTTGCTGGATGTTCATGCCGCCGGGAGGTGGCGGTGGTCATGGTGGGGGTGGCCACGGCGGTGGTTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGc                                                                                                                                 >  2:547586/1‑146 (MQ=255)                 gTATCCGCCTTGTCGGGTTGCTGGATGTTCATGCCGCCGGGAGGTGGCGGTGGTCATGGTGGGGGTGGCCACGGCGGTGGTTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGc                                                                                                                                 <  1:547586/146‑1 (MQ=255)                       gCCTTGTCGGGTTGCTGGATGTTCATGCCGCCGGGAGGTGGCGGTGGTCATGGTGGGGGTGGCCACGGCGGTGGTTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCaa                                                                                                                       >  2:175999/1‑150 (MQ=255)                        ccTTGTCGGGTTGCTGGATGTTCATGCCGCCGGGAGGTGGCGGTGGTCATGGTGGGGGTGGCCACGGCGGTGGTTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAg                                                                                                                      <  2:36386/150‑1 (MQ=255)                           tGTCGGGTTGCTGGATGTTCATGCCGCCGGGAGGTGGCGGTGGTCATGGTGGGGGTGGCCACGGCGGTGGTTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAgcgc                                                                                                                   <  2:53920/150‑1 (MQ=255)                             tCGGGTTGCTGGATGTTCATGCCGCCGGGAGGTGGCGGTGGTCATGGTGGGGGTGGCCACGGCGGTGGTTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGtt                                                                                                                           <  2:816350/140‑1 (MQ=255)                             tCGGGTTGCTGGATGTTCATGCCGCCGGGAGGTGGCGGTGGTCATGGTGGGGGTGGCCACGGCGGTGGTTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGtt                                                                                                                           >  1:816350/1‑140 (MQ=255)                                     cTGGATGTTCATGCCGCCGGGAGGTGGCGGTGGTCATGGTGGGGGTGGCCACGGCGGTGGTTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCaa                                                                                                                       >  1:133329/1‑136 (MQ=255)                                     cTGGATGTTCATGCCGCCGGGAGGTGGCGGTGGTCATGGTGGGGGTGGCCACGGCGGTGGTTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCaa                                                                                                                       <  2:133329/136‑1 (MQ=255)                                      tGGATGTTCATGCCGCCGGGAGGTGGCGGTGGTCATGGTGGGGGTGGCCACGGCGGTGGTGTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAATCGCGTACCCGGCAc                                                                                                        >  2:44724/1‑150 (MQ=255)                                         aTGTTCATGCCGCCGGGAGGTGGCGGTGGTCATGGTGGGGGTGGCCACGGCGGTGGTTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACggg                                                                                                     >  2:471011/1‑150 (MQ=255)                                          gcacccgacgtgaagcaggatcaactgccgatcagcgcatcatcctgcatgccctaaggcgcaaacaccggcgctgtgccacgcgcggttcgggcgaccaatgtgcatgcgc                                                                                                                                          >  2:722301‑M1/109‑112 (MQ=255)                                          gcacccgacgtgaagcaggatcaactgccgatcagcgcatcatcctgcatgccctaaggcgcaaacaccggcgctgtgccacgcgcggttcgggcgaccaatgtgcatgcgc                                                                                                                                          <  1:722301‑M1/4‑1 (MQ=255)                                            acccgacgtgaagcaggatcaactgccgatcagcgcatcatcctgcatgccctaaggcgcaaacaccggcgctgtgccacgcgcggttcgggcgaccaatgtgcatGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGgcgc                                                                                                  <  1:602173‑M1/44‑1 (MQ=255)                                              ccgacgtgaagcaggatcaactgccgatcagcgcatcatcctgcatgccctaaggcgcaaacaccggcgctgtgccacgcgcggttcgggcgaccaatgtgcatGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCAt                                                                                                >  2:602173‑M1/105‑150 (MQ=255)                                                     ccgGGAGGTGGCGGTGGTCATGGTGGGGGTGGCCACGGCGGTGGTTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCATGCACAtt                                                                                         <  1:471011/150‑1 (MQ=255)                                                                        aTGGTGGGGGTGGCCACGGCGGTGGTTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCATGCACATTGGTCGCCCGAACCGCGCGt                                                                      >  1:25584/1‑150 (MQ=255)                                                                          ggtggGGGTGGCCACGGCGGTGGTTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCATGCACATTGGTCGCCCGAACCGCGCGTgg                                                                    >  1:133077/1‑150 (MQ=255)                                                                                           cggTGGTTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCATGCACATTGGTCGCCCGAACCGCGCGTGGCACAGCGCCGGTGTTTg                                                   <  1:175999/150‑1 (MQ=255)                                                                                              tggtTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTACGGTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCATGCACATTGGTCGCCCGAACCGCGCGTGGCACAGCGCCGGTGTTTgcgc                                                <  1:45731/150‑1 (MQ=255)                                                                                                 ttttGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCATGCACATTGGTCGCCCGAACCGCGCGTGGCACAGCGCCGGTGTTTGCGCCtt                                             >  1:236132/1‑150 (MQ=255)                                                                                                       tggCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCATGCACATTGGTCGCCCGAACCGCGCGTGGCACAGCGCCGGTGTTTGCGCCTTAGGGCa                                       >  1:415414/1‑150 (MQ=255)                                                                                                        ggCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCATGCACATTGGTCGCCCGAACCGCGCGTGGCACAGCGCCGGTGTTTGCGCCTTAGGGCAt                                      >  1:772994/1‑150 (MQ=255)                                                                                                        aaacaccggcgctgtgccacgcgcggttcgggcgaccaatgtgcatGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCATGca                                                                                             >  1:690099‑M1/47‑95 (MQ=255)                                                                                                        aaacaccggcgctgtgccacgcgcggttcgggcgaccaatgtgcatGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCATGca                                                                                             <  2:690099‑M1/49‑1 (MQ=255)                                                                                                                   tGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCATGCACATTGGTCGCCCGAACCGCGCGTGGCACAGCGCCGgt                                                        <  2:163855/121‑1 (MQ=255)                                                                                                                   tGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCATGCACATTGGTCGCCCGAACCGCGCGTGGCACAGCGCCGgt                                                        >  1:163855/1‑121 (MQ=255)                                                                                                                   tGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCATGCACATTGGTCGCCCGAACCGCGCGTGGCACAGCGCCGGTGTTTGCGCCTTAGGGCATGCAGGatgatg                           <  2:236132/150‑1 (MQ=255)                                                                                                                       ggcCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCa                                                                                                 <  1:414570/76‑1 (MQ=255)                                                                                                                       ggcCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCa                                                                                                 >  2:414570/1‑76 (MQ=255)                                                                                                                             cgcTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCATGCACATTGGTCGCCCGAACCGCGCGTGGCACAGCGCCGGTGTTTGCGCCTTAGGGCATGCAGGatgatg                           <  1:825989/140‑1 (MQ=255)                                                                                                                             cgcTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCATGCACATTGGTCGCCCGAACCGCGCGTGGCACAGCGCCGGTGTTTGCGCCTTAGGGCATGCAGGatgatg                           >  2:825989/1‑140 (MQ=255)                                                                                                                                  aGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCATGCACATTGGTCGCCCGAACCGCGCGTGGCACAGCGCCGGTGTTTGCGCCTTAGGGCATGCAGGATGATGCGCTGATCGGCAGtt            <  2:509321/150‑1 (MQ=255)                                                                                                                                   gCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACgg                                                                                                      <  1:452652/59‑1 (MQ=255)                                                                                                                                   gCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACgg                                                                                                      >  2:452652/1‑59 (MQ=255)                                                                                                                                      gACCCCTCGATGGACCGCGCCCTCTCGGCCGGGTCGCAAGCGCGTACCCGGCACGGGCGCATGCACATTGGTCGCCCGAACCGCGCGTGGCACAGCGCCGGTTTTTGCGCCTTAGGGCATGCAGGATGATGCGCTGATCGGCAGTTGATc        <  2:420992/150‑1 (MQ=255)                                                                                                                                       aCCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCATGca                                                                                             <  1:325847/64‑1 (MQ=255)                                                                                                                                       aCCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCATGca                                                                                             >  2:325847/1‑64 (MQ=255)                                                                                                                                         cccGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCATGCACATTGGTCGCCCGAACCGCGCGTGGCACAGCGCCGGTGTTTGCGCCTTAGGGCCTGCAGCCTGATGCGCTGATCCGCAGTTGATCCTg     >  2:67168/1‑150 (MQ=255)                                                                                                                                          ccGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCATGCACATTGGTCGCCCGAACCGCGCGTGGCACAGCGCCGGTGTTTGCGCCTTAGGGCATGCAGGATGATGCGCTGATCGGCAGTTGATCCTGc    <  1:67168/150‑1 (MQ=255)                                                                                                                                            gcgATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCATGCACATTGGTCGCCCGAACCGCGCGTGGCACAGCGCCGGTGTTTGCGCCTTAGGGCATGCAGGATGATGCGCTGATCGGCAGTTGATCCTGCtt  <  2:133077/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                            CTTGGTGGCGGCGCTGGTATCCGCCTTGTCGGGTTGCTGGATGTTCATGCCGCCGGGAGGTGGCGGTGGTCATGGTGGGGGTGGCCACGGCGGTGGTTTTGGTGGCCATCAGGGTGGCGGCCCGCGCTAAGCTGACCCCGCGATGGACCGCGCCCTCTCGGCCGGGTTGCAAGCGCGTACCCGGCACGGGCGCATGCACATTGGTCGCCCGAACCGCGCGTGGCACAGCGCCGGTGTTTGCGCCTTAGGGCATGCAGGATGATGCGCTGATCGGCAGTTGATCCTGCTT  >  NC_002947/2876178‑2876466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.