New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2933568 =	34 (1.070)	2 (0.070)	4/230	NT	6.3%	coding (577/4890 nt)	PP_2566	leucine‑rich repeat‑containing protein
	?	NC_002947	2933595 =	28 (0.950)					coding (550/4890 nt)	PP_2566	leucine‑rich repeat‑containing protein

TGAGCCTGGCGATCAATGCCTGGACCCTCAAGGCCTCACGGTTCGCTGCAATCGACAGGCGCTGGATTTCAGCGCGATTGGCGCCTTCATGGGTTGCAAGCAGATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTCCAGCCCCTCGAAGTTGTGCAGGGCAGCCTCCAGCAAACTGCGTGTTTGCGGCTGGCCTA  >  NC_002947/2933424‑2933714                                                                                                                                                 |                                                                                                                                                   tGAGCCTGGCGATCAATGCCTGGACCCTCAAGGCCTCACGGTTCGCTGCAATCGACAGGCGCTGGATTTCAGCGCGATTGGCGCCTTCATGGGTTGCAAGCAGATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGa                                                                                                                                               <  1:568049/150‑1 (MQ=255) cggatgtgctggccacccgccccgtaggccagccgcaaacacgcagtttgctggaggctgccctgcacaaaatccaagggctggacgaagttggtccttacagcaggctcaccaacgccgctggcagcgacacgcccctggcagGCCTGa                                                                                                                                               >  1:743763‑M1/145‑150 (MQ=255)          tggccacccgccccgtaggccagccgcaaacacgcagtttgctggaggctgccctgcacaacttcgaggggctggacgaagtcggtccttacagcaggctcaccaacgccgctggcagcgacacgcccctggcagGc                                                                                                                                                   >  2:64797‑M1/136‑137 (MQ=255)          tggccacccgccccgtaggccagccgcaaacacgcagtttgctggaggctgccctgcacaacttcgaggggctggacgaagtcggtccttacagcaggctcaccaacgccgctggcagcgacacgcccctggcagGc                                                                                                                                                   <  1:64797‑M1/2‑1 (MQ=255)           gATCAATGCCTGGACCCTCAAGGCCTCACGGTTCGCTGCAATCGACAGGCGCTGGATTTCAGCGCGATTGGCGCCTTCATGGGTTGCAAGCAGATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGc                                                                                                                                     >  1:506455/1‑150 (MQ=255)                    caggtcccTCAAGGCCTCACGGTTCGCTGCAATCGACAGGCGCTGGATTTCAGCGCGATTGGCGCCTTCATGGGTTGCAAGCAGATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAg                                                                                                                            >  2:192506/6‑150 (MQ=255)                    cTGGACCCTCAAGGCCTCACGGTTCGCTGCAATCGACAGGCGCTGGATTTCAGCGCGATTGGCGCCTTCATGGGTTGCAAGCAGATGGTCTTGATAAAGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCACCGTCAg                                                                                                                            <  2:594485/150‑1 (MQ=255)                      ggACCCTCAAGGCCTCACGGTTCGCTGCAATCGACAGGCGCTGGATTTCAGCGCGATTGGCGCCTTCATGGGTTGCAAGCAGATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGc                                                                                                                          >  2:658344/1‑150 (MQ=255)                                         gTTCGCTGCAATCGACAGGCGCTGGATTTCAGCGCGATTGGCGCCTTCATGGGTTGCAAGCAGATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCt                                                                                                       <  1:740999/150‑1 (MQ=255)                                               tGCAATCGACAGGCGCTGGATTTCAGCGCGATTGGCGCCTTCATGGGTTGCAAGCAGATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAgc                                                                                                 >  2:425838/1‑150 (MQ=255)                                               tGCAATCGACAGGCGCTGGATTTCAGCGCGATTGGCGCCTTCATGGGTTGCAAGCAGATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAgc                                                                                                 >  2:843174/1‑150 (MQ=255)                                                    tCGACAGGCGCTGGATTTCAGCGCGATTGGCGCCCTCATGAGCTACCAACAGATTTTCTTGATAACGTTTGATGATCTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGt                                                                                            <  1:192506/150‑1 (MQ=255)                                                     cGACAGGCGCTGGATTTCAGCGCGATTGGCGCCTTCATGGGTTGCAAGCAGATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGtt                                                                                           <  1:369642/150‑1 (MQ=255)                                                      gACAGGCGCTGGATTTCAGCGCGATTGGCGCCTTCATGGGTTGCAAGCAGATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTg                                                                                          <  1:425838/150‑1 (MQ=255)                                                        cAGGCGCTGGATTTCAGCGCGATTGGCGCCTTCATGGGTTGCAAGCAGATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGaa                                                                                                                                           >  2:75128/1‑99 (MQ=255)                                                        cAGGCGCTGGATTTCAGCGCGATTGGCGCCTTCATGGGTTGCAAGCAGATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGaa                                                                                                                                           <  1:75128/99‑1 (MQ=255)                                                                              ttGGCGCCTTCATGGGTTGCAAGCAGATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACt                                                                  >  2:151595/1‑150 (MQ=255)                                                                                ggCGCCTTCATGGGTTGCAAGCAGATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCctgct                                                                               <  1:116273/135‑1 (MQ=255)                                                                                ggCGCCTTCATGGGTTGCAAGCAGATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCctgct                                                                               >  2:116273/1‑135 (MQ=255)                                                                                ggCGCCTTCATGGGTTGCAAGCAGATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTc                                                                <  1:151595/150‑1 (MQ=255)                                                                                     cTTCATGGGTTGCAAGCAGATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTCCa                                                           >  1:341629/1‑150 (MQ=255)                                                                                     cTTCATGGGTTGCAAGCAGATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCAGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTCCa                                                           <  1:431883/150‑1 (MQ=255)                                                                                          tGGGTTGCAAGCAGATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTCCAGcccc                                                      >  2:297927/1‑150 (MQ=255)                                                                                                  aaGCAGATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTCCAGCCCCTCGAAGtt                                              >  2:231137/1‑150 (MQ=255)                                                                                                    gCAGATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTCCAGCCCCTCGaa                                                 <  1:237836/145‑1 (MQ=255)                                                                                                    gCAGATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTCCAGCCCCTCGaa                                                 >  2:237836/1‑145 (MQ=255)                                                                                                       gATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTCCAGCCCCTCGAAGTTGTGCa                                         <  1:498025/150‑1 (MQ=255)                                                                                                            tCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTCCAGCCCCTCGAAGTTGTGCAGGGCa                                    >  1:756600/1‑150 (MQ=255)                                                                                                              ttGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTCCAGCCCCTCGAAGTTGTGCAGGGCAGc                                  <  2:28703/150‑1 (MQ=255)                                                                                                                  tAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTCCAGCCCCTCGAAGTTGTGCAGGGCAGCCTcc                              >  1:301669/1‑150 (MQ=255)                                                                                                                  tAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGACCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTCCAGCCCCTCGAAGTTGTGCAGGGCAgagatc                              >  1:450082/1‑145 (MQ=255)                                                                                                                   aaCGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTCCAGCCCCTCGAAGTTGTGCAGGGCa                                    >  2:668466/1‑143 (MQ=255)                                                                                                                   aaCGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTCCAGCCCCTCGAAGTTGTGCAGGGCa                                    <  1:668466/143‑1 (MQ=255)                                                                                                                           ccAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTCCAGCCCCTCGAAGTTGTGc                                          <  2:89205/129‑1 (MQ=255)                                                                                                                           ccAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTCCAGCCCCTCGAAGTTGTGc                                          >  1:89205/1‑129 (MQ=255)                                                                                                                                   cacgcccctggcagGCCTGACGATGGCGGACTTCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTCCAGCCCCTCGAAGTTGTGCAGGGCAGCCTCCAGCAAACTGCGTGTTTg             <  2:592980‑M1/136‑1 (MQ=255)                                                                                                                                    acgcccctggcagGCCTGACGATGGCGGACTTCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTCCAGCCCCTCGAAGTTGTGCAGGGCAGCCTCCAGCAAACTGCGTGTTTGc            >  1:592980‑M1/14‑150 (MQ=255)                                                                                                                                    aGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTCCAGCCCCTCGAAGTTGTGCAGGGCAGCCTCCAGCAAACTGCGTGTTTGc            <  1:843174/150‑1 (MQ=255)                                                                                                                                      cgcCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTCCAGCCCCTCGAAGTTGTGCAGGGCAGCCTCCAGCAAACTGCGTGTTTGCgg          <  2:756600/150‑1 (MQ=255)                                                                                                                                              aaTGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTCCAGCCCCTCGAAGTTGTGCAGGGCAGCCTCCAGCAAACTGCGTGTTTGCGGCTGGCCTa  >  1:163845/1‑150 (MQ=255)                                                                                                                                               agGCCTGACGATGGCGGACTTCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTc                                                             <  1:8316‑M1/88‑1 (MQ=255)                                                                                                                                               agGCCTGACGATGGCGGACTTCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTc                                                             >  2:8316‑M1/3‑90 (MQ=255)                                                                                                                                                 |                                                                                                                                                   TGAGCCTGGCGATCAATGCCTGGACCCTCAAGGCCTCACGGTTCGCTGCAATCGACAGGCGCTGGATTTCAGCGCGATTGGCGCCTTCATGGGTTGCAAGCAGATGGTCTTGATAACGTTTGCCAAGGTCCAGCGCCCGACAATGCCTGACGAAGTCCGCCATCGTCAGGCCTGCCAGGGGCGTGTCGCTGCCAGCGGCGTTGGTGAGCCTGCTGTAAGGACCGACTTCGTCCAGCCCCTCGAAGTTGTGCAGGGCAGCCTCCAGCAAACTGCGTGTTTGCGGCTGGCCTA  >  NC_002947/2933424‑2933714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.