New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3350657 =	29 (0.920)	4 (0.130)	4/236	NT	12.4%	coding (1111/1404 nt)	PP_2945	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	3350699 =	29 (0.960)					coding (1153/1404 nt)	PP_2945	two‑component system sensor histidine kinase/response regulator

GCAGCAGGGCATTGACTCCACGCTTAACATCGTCGCGAGCGAGCTGAAACATAAAGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCA  >  NC_002947/3350509‑3350798                                                                                                                                                     |                                                                                                                                              cataggaaagggacaggcctagcccggtaccttggccgacgggcttggtggtgaaaaaaggatcgaagattttcttgatgttctccggtgctatccccgcgcctgtatctgcaacttcgatgcacacccaggcgccttgatgagcagtGc                                                                                                                                              <  2:707184‑M1/2‑1 (MQ=255)  atatgaaagggacaggcctagcccggtaccttggccgacgggcttggtggtgaaaaaaggatcgaagattttcttgatgttctccggtgctatccccgcgcctgtatctgcaacttcgatgcacacccaggcgccttgatgagcagtGcc                                                                                                                                             <  1:699015‑M1/3‑1 (MQ=255)            ttGACTCCACGCTTAACATCGTCGCGAGCGAGCTGAAACATAAAGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATgg                                                                                                                                   <  2:628658/150‑1 (MQ=255)             tGACTCCACGCTTAACATCGTCGCGAGCGAGCTGAAACATAAAGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATggg                                                                                                                                  <  2:500405/150‑1 (MQ=255)                        ttACCATAGTCGCGAGCGAGCTGAAACATAAAGCCGACCTGGTAAAACGGTACCAGCCGTAACCTGGTGGCGAATGCCCGCCGTCGCAGATCAACCACGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCggg                                                                                                                       <  1:278050/150‑1 (MQ=255)                        ttAACATCGTCGCGAGCGAGCTGAAACATAAAGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCggg                                                                                                                       <  1:151325/150‑1 (MQ=255)                              tcgtcgCGAGCGAGCTGAAACATAAAGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATTGGCCCCGAGCGGGGCACCa                                                                                                                 >  2:411997/1‑150 (MQ=255)                                       acgggcttggtggtgaaaaaaggatcgaagattttcttgatgttctccggtgctatccccgcgcctgtatctgcaacttcgatgcacacccaggcgccttgatgagcagtGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTgg                                                                                                        >  2:228296‑M1/111‑150 (MQ=255)                                              tggtggtgaaaaaaggatcgaagattttcttgatgttctccggtgctatccccgcgcctgtatctgcaacttcgatgcacacccaggcgccttgatgagcagtGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGc                                                                                                 >  1:369476‑M1/104‑150 (MQ=255)                                                    tAAAGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCtcatca                                                                                           >  1:644369/1‑150 (MQ=255)                                                     aaaGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCaa                                                                                          <  2:220539/150‑1 (MQ=255)                                                      aaaaaaggatcgaagattttcttgatgttctccggtgctatccccgcgcctgtatctgcaacttcgatgcacacccaggcgccttgatgagcagtGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTg                                                                                                         <  2:339907‑M1/39‑1 (MQ=255)                                                      aaaaaaggatcgaagattttcttgatgttctccggtgctatccccgcgcctgtatctgcaacttcgatgcacacccaggcgccttgatgagcagtGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTg                                                                                                         >  1:339907‑M1/96‑134 (MQ=255)                                                           gACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCa                                                                                                                    <  2:632926/118‑1 (MQ=255)                                                           gACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCa                                                                                                                    >  1:632926/1‑118 (MQ=255)                                                                      aCGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCAt                                                                         >  1:411406/1‑150 (MQ=255)                                                                          tACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGaa                                                                     <  2:411406/150‑1 (MQ=255)                                                                             cAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGtt                                                                  >  2:473285/1‑150 (MQ=255)                                                                               gCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGc                                                                >  2:53583/1‑150 (MQ=255)                                                                                  gTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGa                                                             <  1:411997/150‑1 (MQ=255)                                                                                         ccTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGc                                                                                                                     >  2:280418/1‑87 (MQ=255)                                                                                         ccTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGc                                                                                                                     <  1:280418/87‑1 (MQ=255)                                                                                                aaTGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGa                                               >  1:301474/1‑150 (MQ=255)                                                                                                      tgccGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCAc                                         >  1:782870/1‑150 (MQ=255)                                                                                                          gTCGCAGATCAACGAAGGGGTAATGAACCTGGTGCGAAAGGCCGCGCAGGCGAGGGGCCCCGAGGGAGGAACCATCACATTGGTCACTGGTGATCAAGGCGCCTGGGTGTGCATCGAAGTTCCAGATACAGGCGCGGGGATAGGACCGga                                     <  2:165622/150‑1 (MQ=255)                                                                                                                 aTCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATc                              <  2:113383/150‑1 (MQ=255)                                                                                                                       cAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCgggg                                                >  2:277587/1‑126 (MQ=255)                                                                                                                       cAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCgggg                                                <  1:277587/126‑1 (MQ=255)                                                                                                                       cAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGaaa                        >  2:115678/1‑150 (MQ=255)                                                                                                                             aTAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTc                  <  2:644369/150‑1 (MQ=255)                                                                                                                             aTAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTc                  <  2:782870/150‑1 (MQ=255)                                                                                                                             aTAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTc                  >  1:336081/1‑150 (MQ=255)                                                                                                                               aaTGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGa                >  2:699015/1‑150 (MQ=255)                                                                                                                               aaTGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGa                <  1:115678/150‑1 (MQ=255)                                                                                                                                             tCAACGGCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTcacca  >  1:727538/1‑150 (MQ=255)                                                                                                                                                 cgccgcCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGga                                     >  2:141390/1‑111 (MQ=255)                                                                                                                                                 cgccgcCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGga                                     <  1:141390/111‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              GCAGCAGGGCATTGACTCCACGCTTAACATCGTCGCGAGCGAGCTGAAACATAAAGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCA  >  NC_002947/3350509‑3350798

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.