New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3350657 =	29 (0.920)	4 (0.130)	4/236	NT	12.4%	coding (1111/1404 nt)	PP_2945	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	3350699 =	29 (0.960)					coding (1153/1404 nt)	PP_2945	two‑component system sensor histidine kinase/response regulator

GAAACATAAAGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCGGCCAAGGTACCGGGCTAGGCCTGTCCCTTTCCTATG  >  NC_002947/3350554‑3350846                                                                                                                                                  |                                                                                                                                                    tggtggtgaaaaaaggatcgaagattttcttgatgttctccggtgctatccccgcgcctgtatctgcaacttcgatgcacacccaggcgccttgatgagcagtGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGc                                                                                                                                                 >  1:369476‑M1/104‑150 (MQ=255)       tAAAGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCtcatca                                                                                                                                           >  1:644369/1‑150 (MQ=255)        aaaGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCaa                                                                                                                                          <  2:220539/150‑1 (MQ=255)                         aCGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCAt                                                                                                                         >  1:411406/1‑150 (MQ=255)                             tACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGaa                                                                                                                     <  2:411406/150‑1 (MQ=255)                                cAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGtt                                                                                                                  >  2:473285/1‑150 (MQ=255)                                  gCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGc                                                                                                                >  2:53583/1‑150 (MQ=255)                                     gTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGa                                                                                                             <  1:411997/150‑1 (MQ=255)                                                   aaTGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGa                                                                                               >  1:301474/1‑150 (MQ=255)                                                         tgccGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCAc                                                                                         >  1:782870/1‑150 (MQ=255)                                                             gTCGCAGATCAACGAAGGGGTAATGAACCTGGTGCGAAAGGCCGCGCAGGCGAGGGGCCCCGAGGGAGGAACCATCACATTGGTCACTGGTGATCAAGGCGCCTGGGTGTGCATCGAAGTTCCAGATACAGGCGCGGGGATAGGACCGga                                                                                     <  2:165622/150‑1 (MQ=255)                                                                    aTCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATc                                                                              <  2:113383/150‑1 (MQ=255)                                                                          cAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCgggg                                                                                                <  1:277587/126‑1 (MQ=255)                                                                          cAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCgggg                                                                                                >  2:277587/1‑126 (MQ=255)                                                                          cAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGaaa                                                                        >  2:115678/1‑150 (MQ=255)                                                                                aTAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTc                                                                  <  2:644369/150‑1 (MQ=255)                                                                                aTAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTc                                                                  >  1:336081/1‑150 (MQ=255)                                                                                aTAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTc                                                                  <  2:782870/150‑1 (MQ=255)                                                                                  aaTGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGa                                                                >  2:699015/1‑150 (MQ=255)                                                                                  aaTGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGa                                                                <  1:115678/150‑1 (MQ=255)                                                                                                tCAACGGCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTcacca                                                  >  1:727538/1‑150 (MQ=255)                                                                                                   gcagtgcccaatgtgatggtgccccgctcggggcccatggcttgggcACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCAccacca                                               >  1:369476‑M2/48‑150 (MQ=255)                                                                                                    cgccgcCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGga                                                                                     <  1:141390/111‑1 (MQ=255)                                                                                                    cgccgcCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGga                                                                                     >  2:141390/1‑111 (MQ=255)                                                                                                          ccaatgtgatggtgccccgctcggggcccatggcttgggcACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGt                                        >  2:228296‑M2/41‑150 (MQ=255)                                                                                                           caatgtgatggtgccccgctcggggcccatggcttgggcACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCtttttt                                                       <  2:339907‑M2/95‑1 (MQ=255)                                                                                                           caatgtgatggtgccccgctcggggcccatggcttgggcACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCtttttt                                                       >  1:339907‑M2/40‑134 (MQ=255)                                                                                                              gCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCCGc                                    >  2:99104/1‑150 (MQ=255)                                                                                                                 tggtgCCCCGCTCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTcac                                                    <  1:511474/127‑1 (MQ=255)                                                                                                                 tggtgCCCCGCTCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTcac                                                    >  2:511474/5‑131 (MQ=255)                                                                                                                  tGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCGGCCAAg                                <  1:473285/150‑1 (MQ=255)                                                                                                                      ccccGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCGGCCAAGGTAc                            >  1:707184/1‑150 (MQ=255)                                                                                                                        ccGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGa                                                                <  2:350440/112‑1 (MQ=255)                                                                                                                        ccGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGa                                                                >  1:350440/1‑112 (MQ=255)                                                                                                                                       tCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCGGCCAAGGTACCGGGCTAGGCCTGTccc           >  1:156519/1‑150 (MQ=255)                                                                                                                                         acaTTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCGGCCAAGGTACCGGGCTAGGCCTGTCCCtt         >  2:647009/1‑150 (MQ=255)                                                                                                                                               ggcACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCGGCCAAGGTACCGGGCTAGGCCTGTCCCTTTCatat   <  1:699015‑M2/147‑1 (MQ=255)                                                                                                                                                gcACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCGGCCAAGGTACCGGGCTAGGCCTGTCCCTTTCCTATg  <  2:707184‑M2/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GAAACATAAAGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAAGCCATGGGCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCGGCCAAGGTACCGGGCTAGGCCTGTCCCTTTCCTATG  >  NC_002947/3350554‑3350846

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.