New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3712434 =	38 (1.200)	3 (0.100)	3/236	NT	9.8%	coding (605/990 nt)	paaA	ring 1,2‑phenylacetyl‑CoA epoxidase subunit alpha
	?	NC_002947	3712486 =	19 (0.630)					coding (553/990 nt)	paaA	ring 1,2‑phenylacetyl‑CoA epoxidase subunit alpha

CGGCACGGTCTGGTCGATGAAGCGCTGGCGCAGTTCGTCGTTGGTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAGGGGCCGTAAGAGGTGCGCTGCAG  >  NC_002947/3712286‑3712576                                                                                                                                                     |                                                                                                                                               cGGCACGGTCTGGTCGATGAAGCGCTGGCGCAGTTCGTCGTTGGTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTc                                                                                                                                               <  2:266999/150‑1 (MQ=255)             gTCGATGAAGCGCTGGCGCAGTTCGTCGTTGGTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTc                                                                                                                                   >  2:635666/1‑150 (MQ=255)             gTCGATGAAGCGCTGGCGCAGTTCGTCGTTGGTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAAAACCGCGCACCACAGGCGGTTGATGGCGTCCTGAACCATGTc                                                                                                                                   >  2:839737/1‑150 (MQ=255)             gTCGATGAAGCGCTGGCGCAGTTCGTCGTTGGTATGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTc                                                                                                                                   >  1:379189/1‑150 (MQ=255)                        ggtGGCGCAGTTCGTCGTTGGTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATTTCGCGCTGGGCtt                                                                                                                        <  2:20070/148‑1 (MQ=255)                         cTGGCGCAGTTCGTCGTTGGTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTg                                                                                                                       <  1:751967/150‑1 (MQ=255)                                   tcgtcgTTGGTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTgg                                                                                                             <  1:306248/150‑1 (MQ=255)                                        gtTGGTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGccc                                                                                                                >  1:217893/1‑142 (MQ=255)                                        gtTGGTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGccc                                                                                                                <  2:217893/142‑1 (MQ=255)                                           ggTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGcatcat                                                                                                     <  2:679912/150‑1 (MQ=255)                                            tcaaccaggtggtactgcagcgcacctcttacggcccctactcccgcgcgatgatccgtatctgcaaggaagagagcttccaccagcgccagggctacgaaatgcTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGcatcat                                                                                                     >  1:538431‑M1/106‑149 (MQ=255)                                            tcaaccaggtggtactgcagcgcacctcttacggcccctactcccgcgcgatgatccgtatctgcaaggaagagagcttccaccagcgccagggctacgaaatgcTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGcatcat                                                                                                     <  2:538431‑M1/44‑1 (MQ=255)                                            gTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATg                                                                                                    >  2:562692/1‑150 (MQ=255)                                                ggCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCa                                                                                                <  1:551898/150‑1 (MQ=255)                                                 gCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAg                                                                                               <  1:635666/150‑1 (MQ=255)                                                   gTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGcatc                                                                                                       <  1:414132/140‑1 (MQ=255)                                                   gTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGcatc                                                                                                       >  2:414132/1‑140 (MQ=255)                                                   gTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGa                                                                                             <  2:594946/150‑1 (MQ=255)                                                    tttGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAg                                                                                            >  2:616434/1‑150 (MQ=255)                                                    tttGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGAGGAACAGCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAg                                                                                            >  1:320583/1‑150 (MQ=255)                                                      ggtactgcagcgcacctcttacggcccctactctcgcgcgatgaccctgatctgcaaggaagagagcttccaccagcgccagggctacgaaatgcTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCa                                                                                          >  1:93460‑M1/96‑150 (MQ=255)                                                           ttCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCg                                                                                     >  2:756658/1‑150 (MQ=255)                                                                    aTCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTgg                                                                            >  1:422437/1‑150 (MQ=255)                                                                         cTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCtg                                                                       <  1:756658/150‑1 (MQ=255)                                                                            ggCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCtggtg                                                                    <  1:460660/150‑1 (MQ=255)                                                                            ggCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCtggtg                                                                    <  1:562692/150‑1 (MQ=255)                                                                                 tGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGc                                                               >  2:332626/1‑150 (MQ=255)                                                                                       gCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCtt                                                         <  2:320583/150‑1 (MQ=255)                                                                                        cGAGGGTTCATCGCTCGGGCCGAACATCATGAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCTCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTc                                                        <  2:322024/150‑1 (MQ=255)                                                                                         gAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTcc                                                       <  1:599468/150‑1 (MQ=255)                                                                                                       cGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGat                                         <  2:422437/150‑1 (MQ=255)                                                                                                             gAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATcgc                                   >  1:785944/1‑150 (MQ=255)                                                                                                                 atcatcAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTAGCGCCTCTCTTCCTTGCAGATACGGATCATCGCGCgg                               <  1:839737/150‑1 (MQ=255)                                                                                                                     tcaGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGCGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGt                           >  2:349628/1‑150 (MQ=255)                                                                                                                            cgatctccacAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAGGGGcc                    <  1:398819/144‑1 (MQ=255)                                                                                                                              gCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCt                                                                              >  2:562885/1‑90 (MQ=255)                                                                                                                              gCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCt                                                                              <  1:562885/90‑1 (MQ=255)                                                                                                                                caccacAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAg                                                                                               <  1:774444/71‑1 (MQ=255)                                                                                                                                caccacAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAg                                                                                               >  2:774444/1‑71 (MQ=255)                                                                                                                                   cacaGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTAGGCTCTCTTCGTGCATCTTGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAGGGGCCGTAagag             <  1:616434/150‑1 (MQ=255)                                                                                                                                             tGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAGGGGCCGTAAGAGGTGCGCTGCa   <  1:349628/150‑1 (MQ=255)                                                                                                                                              gATGGCGTCCTGAACCATTTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAGGGGCCGTAAGAGGTGCGCTGCAg  >  2:229091/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                               CGGCACGGTCTGGTCGATGAAGCGCTGGCGCAGTTCGTCGTTGGTCTGGCGTTTGATCTTCCAGGCCATCGACTGGGCGCTGTTGGGCGAGTGTTCATCGCTCGGGCCGAACATCATCAGCGCCGGCCACCACAGGCGGTTGATGGCGTCCTGAACCATGTCGCGCTGGGCTTGGGTGCCCTGGCGCATCATGGTCAGGAGCATTTCGTAGCCCTGGCGCTGGTGGAAGCTCTCTTCCTTGCAGATACGGATCATCGCGCGGGAGTAGGGGCCGTAAGAGGTGCGCTGCAG  >  NC_002947/3712286‑3712576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.