New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3928401 =	40 (1.260)	6 (0.210)	6/220	NT	15.7%	intergenic (+33/‑107)	peaE/PP_3464	phenylacetaldehyde dehydrogenase/hypothetical protein
	?	NC_002947	3928446 =	29 (1.030)					intergenic (+78/‑62)	peaE/PP_3464	phenylacetaldehyde dehydrogenase/hypothetical protein

GACCCGGCGCTGCCGTTTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCC  >  NC_002947/3928258‑3928538                                                                                                                                                |                                                                                                                                          gccccGGCGCTGCCGATTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCGGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGCCCTCTTCGCGGGTAAACCCGc                                                                                                                                     <  2:406050/148‑1 (MQ=255) atcgtggttgtacagctcgtaggcttggctggcgggggcggttaacagcagggccaatgtgcaggcgagtgtgtgcctcatggggttgctccatggtttttattgttgtttttttgttgcctgtgccggcctcttcgcgggtgAACCCGc                                                                                                                                     >  2:349623‑M1/144‑150 (MQ=255)   cgtggttgtacagctcgtaggcttggctggcgggggcggttaacagcagggccaatgtgcaggcgagtgtgtgcctcatggggttgctccatggtttttattgttgtttttttgttgcctgtgccggcctcttcgcgggtgAACCCGCTc                                                                                                                                   >  1:505912‑M1/142‑150 (MQ=255)      ggCGCTGCCGTTTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTa                                                                                                                                >  1:355682/1‑150 (MQ=255)                            gctggcgggggcggttaacagcagggccaatgtgcaggcgagtgtgtgcctcatggggttgctccatggtttttattgttgtttttttgttgcctgtgccggcctcttcgcgggtgAACCCGCTCCTACACCAGGTATCACATGCCCTGt                                                                                                          >  2:389848‑M1/117‑150 (MQ=255)                             aGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTa                                                                                                         >  2:490254/1‑150 (MQ=255)                                  tCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGc                                                                                                    >  2:651860/1‑150 (MQ=255)                                    tgccGTTAGTCGTGACATGCGTTCAGCGGCCATCGAGCAGTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGCTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCgg                                                                                                  <  2:399429/147‑1 (MQ=255)                                    tGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCgg                                                                                                  <  1:177777/150‑1 (MQ=255)                                      gCGGTGGTCGTGAAATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGt                                                                                                <  2:618533/150‑1 (MQ=255)                                           ggTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCTGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCAcc                                                                                           <  2:209976/150‑1 (MQ=255)                                              cagcagggccaatgtgcaggcgagtgtgtgcctcatggggttgctccatggtttttattgttgtttttttgttgcctgtgccggcctcttcgcgggtgAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCcgc                                                                                        >  2:805732‑M1/99‑150 (MQ=255)                                                        gTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTCCACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCg                                                                              >  1:402044/1‑150 (MQ=255)                                                               ggCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTGAACCCGc                                                                                                                                     <  1:507104/88‑1 (MQ=255)                                                               ggCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTGAACCCGc                                                                                                                                     >  2:507104/1‑88 (MQ=255)                                                               aggcgagtgtgtgcctcatggggttgctccatggtttttattgttgtttttttgttgcctgtgccggcctcttcgcgggtaAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGaa                                                                                     >  1:375515‑M1/82‑136 (MQ=255)                                                               aggcgagtgtgtgcctcatggggttgctccatggtttttattgttgtttttttgttgcctgtgccggcctcttcgcgggtaAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGaa                                                                                     <  2:375515‑M1/55‑1 (MQ=255)                                                                  cATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGcaa                                                                    <  1:651860/150‑1 (MQ=255)                                                                   aTCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGcaac                                                                   >  2:125276/1‑150 (MQ=255)                                                                   aTCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTGAACCcgctc                                                                                      >  2:429730/1‑129 (MQ=255)                                                                   aTCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTGAACCcgctc                                                                                      <  1:429730/131‑3 (MQ=255)                                                                    tCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGcaaca                                                                  >  1:611305/1‑150 (MQ=255)                                                                    tCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGcaaca                                                                  >  2:556293/1‑150 (MQ=255)                                                                      gAGCATTACACGGATCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAg                                                                        <  2:450299/142‑1 (MQ=255)                                                                      gAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTTTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAg                                                                        >  1:450299/1‑142 (MQ=255)                                                                         gtgcctcatggggttgctccatggtttttattgttgtttttttgttgcctgtgccggcctcttcgcgggtgAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCgg                                                                                                  <  2:20363‑M1/42‑1 (MQ=255)                                                                         gtgcctcatggggttgctccatggtttttattgttgtttttttgttgcctgtgccggcctcttcgcgggtgAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCgg                                                                                                  >  1:20363‑M1/72‑113 (MQ=255)                                                                          aTTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGCAACaaaaaaa                                                            >  1:96691/1‑150 (MQ=255)                                                                           ttACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAaga                                                                                   <  2:830823/126‑1 (MQ=255)                                                                           ttACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAaga                                                                                   >  1:830823/1‑126 (MQ=255)                                                                             acacGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAaacaa                                                         <  2:611305/150‑1 (MQ=255)                                                                             acacGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAaacaa                                                         <  2:355682/150‑1 (MQ=255)                                                                             acacGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAaacaa                                                         <  1:490254/150‑1 (MQ=255)                                                                                      tGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAaga                                                                                   >  2:31646/1‑115 (MQ=255)                                                                                      tGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAaga                                                                                   <  1:31646/115‑1 (MQ=255)                                                                                      tGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAaacaa                                                         >  1:589886/1‑141 (MQ=255)                                                                                      tGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATaaaaa                                                >  2:544919/1‑150 (MQ=255)                                                                                      tGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTACTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAaacaa                                                         <  2:589886/141‑1 (MQ=255)                                                                                       gAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAAc                                               <  1:544919/150‑1 (MQ=255)                                                                                            cGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCCCGTCAGCCTGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATgt                                          <  1:488535/150‑2 (MQ=39)                                                                                                    aTCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCa                                                                                             <  2:470287/91‑1 (MQ=255)                                                                                                    aTCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCa                                                                                             >  1:470287/1‑91 (MQ=255)                                                                                                    aTCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGc                                                                                >  2:115154/1‑104 (MQ=255)                                                                                                    aTCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGc                                                                                <  1:115154/104‑1 (MQ=255)                                                                                                    aTCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCCACAAAAAAACAACAATAAAGACCATGGAGCAAccc                                  >  2:595116/1‑150 (MQ=255)                                                                                                              gATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGcac                        >  2:439771/1‑150 (MQ=255)                                                                                                                              ccGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACAt        <  1:125276/150‑1 (MQ=255)                                                                                                                                    tctTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGccc  >  2:78727/1‑150 (MQ=255)                                                                                                                                                |                                                                                                                                          GACCCGGCGCTGCCGTTTGGTGGCTACAAGATGTCTGGCGTTGGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCC  >  NC_002947/3928258‑3928538

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.