New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3928401 =	40 (1.260)	6 (0.210)	6/220	NT	15.7%	intergenic (+33/‑107)	peaE/PP_3464	phenylacetaldehyde dehydrogenase/hypothetical protein
	?	NC_002947	3928446 =	29 (1.030)					intergenic (+78/‑62)	peaE/PP_3464	phenylacetaldehyde dehydrogenase/hypothetical protein

GGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAAT‑AAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGAT  >  NC_002947/3928300‑3928588                                                                                                                                                   |                                                                                                                                                ggTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCTGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCAcc                                                                                                                                              <  2:209976/150‑1 (MQ=255)    cagcagggccaatgtgcaggcgagtgtgtgcctcatggggttgctccatggtttttattgttgtttttttgttgcctgtgccggcctcttcgcgggtgAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCcgc                                                                                                                                           >  2:805732‑M1/99‑150 (MQ=255)              gTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTCCACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCg                                                                                                                                 >  1:402044/1‑150 (MQ=255)                     aggcgagtgtgtgcctcatggggttgctccatggtttttattgttgtttttttgttgcctgtgccggcctcttcgcgggtaAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGaa                                                                                                                                        <  2:375515‑M1/55‑1 (MQ=255)                     aggcgagtgtgtgcctcatggggttgctccatggtttttattgttgtttttttgttgcctgtgccggcctcttcgcgggtaAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGaa                                                                                                                                        >  1:375515‑M1/82‑136 (MQ=255)                        cATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGcaa                                                                                                                       <  1:651860/150‑1 (MQ=255)                         aTCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGcaac                                                                                                                      >  2:125276/1‑150 (MQ=255)                         aTCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTGAACCcgctc                                                                                                                                         >  2:429730/1‑129 (MQ=255)                         aTCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTGAACCcgctc                                                                                                                                         <  1:429730/131‑3 (MQ=255)                          tCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGcaaca                                                                                                                     >  1:611305/1‑150 (MQ=255)                          tCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGcaaca                                                                                                                     >  2:556293/1‑150 (MQ=255)                            gAGCATTACACGGATCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAg                                                                                                                           <  2:450299/142‑1 (MQ=255)                            gAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTTTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAg                                                                                                                           >  1:450299/1‑142 (MQ=255)                                aTTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGCAACaaaaaaa                                                                                                               >  1:96691/1‑150 (MQ=255)                                 ttACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAaga                                                                                                                                      <  2:830823/126‑1 (MQ=255)                                 ttACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAaga                                                                                                                                      >  1:830823/1‑126 (MQ=255)                                   acacGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAaacaa                                                                                                            <  1:490254/150‑1 (MQ=255)                                   acacGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAaacaa                                                                                                            <  2:355682/150‑1 (MQ=255)                                   acacGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAaacaa                                                                                                            <  2:611305/150‑1 (MQ=255)                                            tGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAaga                                                                                                                                      >  2:31646/1‑115 (MQ=255)                                            tGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAaga                                                                                                                                      <  1:31646/115‑1 (MQ=255)                                            tGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAaacaa                                                                                                            >  1:589886/1‑141 (MQ=255)                                            tGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAAT‑aaaaa                                                                                                  >  2:544919/1‑150 (MQ=255)                                            tGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTACTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAaacaa                                                                                                            <  2:589886/141‑1 (MQ=255)                                             gAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAAT‑AAAAAc                                                                                                 <  1:544919/150‑1 (MQ=255)                                                  cGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCCCGTCAGCCTGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAAT‑AAAAACCATgt                                                                                            <  1:488535/150‑2 (MQ=39)                                                          aTCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCa                                                                                                                                                >  1:470287/1‑91 (MQ=255)                                                          aTCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCa                                                                                                                                                <  2:470287/91‑1 (MQ=255)                                                          aTCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGc                                                                                                                                   >  2:115154/1‑104 (MQ=255)                                                          aTCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGc                                                                                                                                   <  1:115154/104‑1 (MQ=255)                                                          aTCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCCACAAAAAAACAACAAT‑AAAGACCATGGAGCAAccc                                                                                    >  2:595116/1‑150 (MQ=255)                                                                    gATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAAT‑AAAAACCATGGAGCAACCCCATGAGGcac                                                                          >  2:439771/1‑150 (MQ=255)                                                                                    ccGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAAT‑AAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACAt                                                          <  1:125276/150‑1 (MQ=255)                                                                                          tctTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAAT‑AAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGccc                                                    >  2:78727/1‑150 (MQ=255)                                                                                            ttcgcgggtgaacccgctcctacagggcatgtgatacctggtgtaggagcgggttTACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAAT‑AAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCt                                                                <  2:375515‑M2/81‑1 (MQ=255)                                                                                            ttcgcgggtgaacccgctcctacagggcatgtgatacctggtgtaggagcgggttTACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAAT‑AAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCt                                                                >  1:375515‑M2/56‑136 (MQ=255)                                                                                               gcgggtgaacccgctcctacagggcatgtgatacctggtgtaggagcgggttCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAAT‑AAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCctgctg                                               >  2:805732‑M2/53‑150 (MQ=255)                                                                                                        CCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAAT‑AAAAACCATGGAGCAAccc                                                                                    <  2:279125‑M1/104‑1 (MQ=255)                                                                                                        CCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAAT‑AAAAACCATGGAGCAAccc                                                                                    >  1:279125‑M1/1‑104 (MQ=255)                                                                                                         ccgctcctacagggcatgtgatacctggtgtaggagcgggttCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAAT‑AAAAACCATGGAGCAACCCCATGAGGcac                                                                          <  2:20363‑M2/71‑1 (MQ=255)                                                                                                         ccgctcctacagggcatgtgatacctggtgtaggagcgggttCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAAT‑AAAAACCATGGAGCAACCCCATGAGGcac                                                                          >  1:20363‑M2/43‑113 (MQ=255)                                                                                                                 acagggcatgtgatacctggtgtaggagcgggttCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAAT‑AAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCgccagc                             >  2:389848‑M2/35‑150 (MQ=255)                                                                                                                             acaTGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAATAAAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGa                  >  2:263218/1‑150 (MQ=255)                                                                                                                                          gagcgggttCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAAT‑AAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACg    >  1:505912‑M2/10‑150 (MQ=255)                                                                                                                                            gcgggttCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAAT‑AAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGAt  >  2:349623‑M2/8‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                GGTCGTGAGATGGGTTCAGCGGCCATCGAGCATTACACGGAGCTGAAATCGGTGTTGATCAAGCTCTGATCCTTTTTCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCAGGTATCACATGCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACAAAAAAACAACAAT‑AAAAACCATGGAGCAACCCCATGAGGCACACACTCGCCTGCACATTGGCCCTGCTGTTAACCGCCCCCGCCAGCCAAGCCTACGAGCTGTACAACCACGAT  >  NC_002947/3928300‑3928588

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.