New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4069517 =	32 (1.010)	5 (0.160)	4/238	NT	13.6%	coding (2686/3099 nt)	mdtB	multidrug transporter membrane protein
	?	NC_002947	4069541 =	33 (1.090)					coding (2662/3099 nt)	mdtB	multidrug transporter membrane protein

CGGGCTCATGCCCTGATTGCGCTCGGCCTCCAGGGCGAAGTCGATCATCATGATCGCGTTCTTCTTGACGATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACAGCGACGCCTGGAAGGCCTCCGCC  >  NC_002947/4069368‑4069662                                                                                                                                                      |                                                                                                                                                   gggtgtgcagacccgcttccagggtgcggcggaggccttccaggcgtcgctgtcgagtaccctgctgctgattctggcggcggtggtgaccatgtacatcgtgctgggggtgctgtacgaaagctacatccacccgatcaccatcctctc                                                                                                                                                    >  1:146369‑M1/150‑150 (MQ=255)    gCTCATGCCCTGATTGCGCTCGGCCTCCAGGGCGAAGTCGATCATCATGATCGCGTTCTTCTTGACGATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCaccgac                                                                                                                                                 >  2:19826/1‑150 (MQ=255)     cTCATGCCCTGATTGCGCTCGGCCTCCAGGGCGAAGTCGATCATCATGATCGCGTTCTTCTTGACGATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCaccgacc                                                                                                                                                <  1:328179/150‑1 (MQ=255)                    cgcTCGGCCTCCAGGGCGAAGTCGATCATCATGATCGCGTTCTGCTTTACGATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAg‑g                                                                                                                                <  1:484367/150‑1 (MQ=255)                                  ggCGAAGTCGATCATCATGATCGCGTTCTTCTTGACGATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCga                                                                                                                           <  2:515673/141‑1 (MQ=255)                                  ggCGAAGTCGATCATCATGATCGCGTTCTTCTTGACGATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCga                                                                                                                           >  1:515673/1‑141 (MQ=255)                                      aaGTCGATCATCATGATCGCGTTCTTCTTGACGATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATc                                                                                                              <  2:681221/150‑1 (MQ=255)                                        gTCGATCATCATGATCGCGTTCTTCTTGACGATACCGATCAGCAGGATGACGCCCATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCgg                                                                                                            <  1:266133/150‑1 (MQ=255)                                             tcatcaTGATCGCGTTCTTCTTGACGATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGAGGGTGATCGGGTGGa                                                                                                       >  2:46156/1‑150 (MQ=255)                                                 catGATCGCGTTCTTCTTGACGATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACAGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTa                                                                                                   <  1:494520/150‑1 (MQ=255)                                                          gttgttCCTGGCGATACCGATCAGCGGGACGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTa                                                                                          <  2:645340/150‑1 (MQ=255)                                                                  tGACGATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCAccc                                                                                  >  2:545091/1‑150 (MQ=255)                                                                   gACGATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATgg                                                                                                                   <  1:324692/116‑1 (MQ=255)                                                                   gACGATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATgg                                                                                                                   >  2:324692/1‑116 (MQ=255)                                                                      gATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAg                                                                              >  2:707112/1‑150 (MQ=255)                                                                            caTCAACAGGCTTATGCCGATGATGGCGATCATTCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGAt                                                                        <  1:345357/149‑1 (MQ=255)                                                                             aTCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATg                                                                       <  2:591877/150‑1 (MQ=255)                                                                                agcagGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTAc                                                                    >  1:389142/1‑150 (MQ=255)                                                                                  cagGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACAt                                                                  <  2:389142/150‑1 (MQ=255)                                                                                     gatgatGCCGATGATGGAGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGt                                                               >  2:782333/1‑150 (MQ=255)                                                                                            ccGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCaccacc                                                        >  2:717033/1‑150 (MQ=255)                                                                                                  atgGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCgccgcc                                                  >  1:674401/1‑150 (MQ=255)                                                                                                   tgGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGGTGTAGCGTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCa                                                 >  2:663618/1‑150 (MQ=255)                                                                                                       gATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTca                                                             <  1:823850/134‑1 (MQ=255)                                                                                                       gATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTca                                                             >  2:823850/1‑134 (MQ=255)                                                                                                           ggggtgctgtacgaaagctacatccacccgatcaccatcctctCGACCGCCGCCGACGGCAG‑GGTCgaga                                                                                                                         >  2:151042‑M1/44‑70 (MQ=255)                                                                                                           ggggtgctgtacgaaagctacatccacccgatcaccatcctctCGACCGCCGCCGACGGCAG‑GGTCgaga                                                                                                                         <  1:151042‑M1/27‑1 (MQ=255)                                                                                                                      gTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCACCAGAATCAGCAGCAGGGTACt                              >  2:650516/1‑150 (MQ=255)                                                                                                                       ttACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTc                             >  1:845390/1‑150 (MQ=255)                                                                                                                       ttACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCAGCCAGAATCAGCAGCAGGGTACTc                             >  1:601633/1‑150 (MQ=255)                                                                                                                           cGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATgg                                                                                                                   <  2:530825/60‑1 (MQ=255)                                                                                                                           cGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATgg                                                                                                                   >  1:530825/1‑60 (MQ=255)                                                                                                                                 tccacccgatcaccatcctctCGACC‑CTGCCGTCGGCGGCGGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACAGCAACg                   <  2:388330‑M1/129‑1 (MQ=255)                                                                                                                                     cAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACAGCGACGCCTg               >  2:146442/1‑150 (MQ=255)                                                                                                                                         gCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACAGCGACGCCTGGAAg           <  1:146442/150‑1 (MQ=255)                                                                                                                                           cAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACAGCGACGCCTGGAAGGc         <  1:707112/150‑1 (MQ=255)                                                                                                                                               aaGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACa                         >  2:598124/1‑130 (MQ=255)                                                                                                                                               aaGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACa                         <  1:598124/130‑1 (MQ=255)                                                                                                                                                tcctctCGACC‑CTGCCGTCGGCGGCGGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACAGCGACGCCTGGAAGGCCTccg    <  2:413486‑M1/144‑1 (MQ=255)                                                                                                                                                tcctctCGACC‑CTGCCGTCGGCGGCGGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACAGCGACGCCTGGAAGGCCTccg    <  2:680564‑M1/144‑1 (MQ=255)                                                                                                                                                  gCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCACCAGAATCAGCAGCAGGGTACTCGACAGCGACGCCTGGAAGGCCTccgcc  <  1:650516/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   CGGGCTCATGCCCTGATTGCGCTCGGCCTCCAGGGCGAAGTCGATCATCATGATCGCGTTCTTCTTGACGATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACAGCGACGCCTGGAAGGCCTCCGCC  >  NC_002947/4069368‑4069662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.