New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4069517 =	32 (1.010)	5 (0.160)	4/238	NT	13.6%	coding (2686/3099 nt)	mdtB	multidrug transporter membrane protein
	?	NC_002947	4069541 =	33 (1.090)					coding (2662/3099 nt)	mdtB	multidrug transporter membrane protein

CAGGGCGAAGTCGATCATCATGATCGCGTTCTTCTTGACGATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACAGCGACGCCTGGAAGGCCTCCGCCGCACCCTGGAAGCGGGTCTGCACACCC  >  NC_002947/4069398‑4069689                                                                                                                                                 |                                                                                                                                                     cggaggccttccaggcgtcgctgtcgagtaccctgctgctgattctggcggcggtggtgaccatgtacatcgtgctgggggtgctgtacgaaagctacatccacccgatcaccatcctctcgaccgccgccgacggcagggtcgAGAGGa                                                                                                                                                 <  2:680564‑M2/6‑1 (MQ=255) cggaggccttccaggcgtcgctgtcgagtaccctgctgctgattctggcggcggtggtgaccatgtacatcgtgctgggggtgctgtacgaaagctacatccacccgatcaccatcctctcgaccgccgccgacggcagggtcgAGAGGa                                                                                                                                                 <  2:413486‑M2/6‑1 (MQ=255)    ggCGAAGTCGATCATCATGATCGCGTTCTTCTTGACGATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCga                                                                                                                                                      <  2:515673/141‑1 (MQ=255)    ggCGAAGTCGATCATCATGATCGCGTTCTTCTTGACGATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCga                                                                                                                                                      >  1:515673/1‑141 (MQ=255)        aaGTCGATCATCATGATCGCGTTCTTCTTGACGATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATc                                                                                                                                         <  2:681221/150‑1 (MQ=255)          gTCGATCATCATGATCGCGTTCTTCTTGACGATACCGATCAGCAGGATGACGCCCATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCgg                                                                                                                                       <  1:266133/150‑1 (MQ=255)               tcatcaTGATCGCGTTCTTCTTGACGATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGAGGGTGATCGGGTGGa                                                                                                                                  >  2:46156/1‑150 (MQ=255)                cgttgctgtcgagtaccctgctgctgattctggcggcggtggtgaccatgtacatcgtgctgggggtgctgtacgaaagctacatccacccgatcaccatcctctcgaccgccgccgacggcagggtcgAGAGGATGGTGATCGGGTGGa                                                                                                                                  <  2:388330‑M2/21‑1 (MQ=255)                   catGATCGCGTTCTTCTTGACGATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACAGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTa                                                                                                                              <  1:494520/150‑1 (MQ=255)                            gttgttCCTGGCGATACCGATCAGCGGGACGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTa                                                                                                                     <  2:645340/150‑1 (MQ=255)                                    tGACGATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCAccc                                                                                                             >  2:545091/1‑150 (MQ=255)                                     gACGATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATgg                                                                                                                                              >  2:324692/1‑116 (MQ=255)                                     gACGATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATgg                                                                                                                                              <  1:324692/116‑1 (MQ=255)                                        gATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAg                                                                                                         >  2:707112/1‑150 (MQ=255)                                              caTCAACAGGCTTATGCCGATGATGGCGATCATTCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGAt                                                                                                   <  1:345357/149‑1 (MQ=255)                                               aTCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATg                                                                                                  <  2:591877/150‑1 (MQ=255)                                                  agcagGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTAc                                                                                               >  1:389142/1‑150 (MQ=255)                                                    cagGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACAt                                                                                             <  2:389142/150‑1 (MQ=255)                                                       gatgatGCCGATGATGGAGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGt                                                                                          >  2:782333/1‑150 (MQ=255)                                                              ccGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCaccacc                                                                                   >  2:717033/1‑150 (MQ=255)                                                                    atgGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCgccgcc                                                                             >  1:674401/1‑150 (MQ=255)                                                                     tgGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGGTGTAGCGTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCa                                                                            >  2:663618/1‑150 (MQ=255)                                                                         gATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTca                                                                                        >  2:823850/1‑134 (MQ=255)                                                                         gATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTca                                                                                        <  1:823850/134‑1 (MQ=255)                                                                             ggggtgctgtacgaaagctacatccacccgatcaccatcctctCGACCGCCGCCGACGGCAG‑GGTCgaga                                                                                                                                                    >  2:151042‑M1/44‑70 (MQ=255)                                                                             ggggtgctgtacgaaagctacatccacccgatcaccatcctctCGACCGCCGCCGACGGCAG‑GGTCgaga                                                                                                                                                    <  1:151042‑M1/27‑1 (MQ=255)                                                                                        gTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCACCAGAATCAGCAGCAGGGTACt                                                         >  2:650516/1‑150 (MQ=255)                                                                                         ttACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTc                                                        >  1:845390/1‑150 (MQ=255)                                                                                         ttACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCAGCCAGAATCAGCAGCAGGGTACTc                                                        >  1:601633/1‑150 (MQ=255)                                                                                             cGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATgg                                                                                                                                              <  2:530825/60‑1 (MQ=255)                                                                                             cGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATgg                                                                                                                                              >  1:530825/1‑60 (MQ=255)                                                                                                   tccacccgatcaccatcctctCGACC‑CTGCCGTCGGCGGCGGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACAGCAACg                                              <  2:388330‑M1/129‑1 (MQ=255)                                                                                                       cAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACAGCGACGCCTg                                          >  2:146442/1‑150 (MQ=255)                                                                                                           gCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACAGCGACGCCTGGAAg                                      <  1:146442/150‑1 (MQ=255)                                                                                                             cAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACAGCGACGCCTGGAAGGc                                    <  1:707112/150‑1 (MQ=255)                                                                                                                 aaGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACa                                                    <  1:598124/130‑1 (MQ=255)                                                                                                                 aaGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACa                                                    >  2:598124/1‑130 (MQ=255)                                                                                                                  tcctctCGACC‑CTGCCGTCGGCGGCGGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACAGCGACGCCTGGAAGGCCTccg                               <  2:413486‑M1/144‑1 (MQ=255)                                                                                                                  tcctctCGACC‑CTGCCGTCGGCGGCGGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACAGCGACGCCTGGAAGGCCTccg                               <  2:680564‑M1/144‑1 (MQ=255)                                                                                                                    gCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCACCAGAATCAGCAGCAGGGTACTCGACAGCGACGCCTGGAAGGCCTccgcc                             <  1:650516/150‑1 (MQ=255)                                                                                                                      tctcgaccctgccgtcggcggcggtcgAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCAcccc                                                                                                            >  2:151042‑M2/28‑70 (MQ=255)                                                                                                                      tctcgaccctgccgtcggcggcggtcgAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCAcccc                                                                                                            <  1:151042‑M2/43‑1 (MQ=255)                                                                                                                       gggggCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACAGCGACGCCTGGAAGGCCTCCGCCGCa                          >  2:845390‑M1/6‑150 (MQ=255)                                                                                                                               cgccgACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACAGCGACGCCTGGAAGGCCTCCGCCGCACCCTGGaa                  >  1:112453/1‑150 (MQ=255)                                                                                                                                   gACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACAGCGACGCCTGGCCGGCCTCCGCCGCATCCTGGAAGCgg              <  1:19826/150‑1 (MQ=255)                                                                                                                                     cGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACAGCGACGCCTGGAAGGCCTCCGCCGCACCCTGGAAGCGGGt            <  2:112453/150‑1 (MQ=255)                                                                                                                                                gAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACAGCGACGCCTGGAAGGCCTCCGCCGCACCCTGGAAGCGGGTCTGCACAccc  >  1:146369‑M2/2‑150 (MQ=255)                                                                                                                                                 |                                                                                                                                                     CAGGGCGAAGTCGATCATCATGATCGCGTTCTTCTTGACGATACCGATCAGCAGGATGATGCCGATGATGGCGATCATGCCCAGGTCGTTACCGCTGATGAGCAAGGCCAGCAAGGCACCGACCGCCGCCGACGGCAG‑GGTCGAGAGGATGGTGATCGGGTGGATGTAGCTTTCGTACAGCACCCCCAGCACGATGTACATGGTCACCACCGCCGCCAGAATCAGCAGCAGGGTACTCGACAGCGACGCCTGGAAGGCCTCCGCCGCACCCTGGAAGCGGGTCTGCACACCC  >  NC_002947/4069398‑4069689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.