New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4119119	29 (0.920)	4 (0.130)	4/242	NT	10.9%	coding (1765/2256 nt)	PP_3622	isoquinoline 1‑oxidoreductase subunit beta
	?	NC_002947	= 4119138	37 (1.200)					coding (1784/2256 nt)	PP_3622	isoquinoline 1‑oxidoreductase subunit beta

GCGCTCGGTAGGTAACTCGCTGAACGACTTCTTCTACGAATCATTCCTGGACGAACTGGCGGACAAAGGTGGCAAGGACCCGTTTGAACTGCGCCTGCACCTGCTGCGCGACAACCCGAGACTGACCAACCTGCTGAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTGGCCATGGCCTCACCGTTCGGCTCGGAGGCTGCGGTCATTGCCGAGGTTTCGATCGACAACGGCCAGGTCAGG  >  NC_002947/4118977‑4119265                                                                                                                                               |                                                                                                                                                   gcgcTCGGTAGGTAACTCGCTGAACGACTTCTTCTACGAATCATTCCTGGACGAACTGGCGGACAAAGGTGGCAAGGACCCGTTTGAACTGCGCCTGCACCTGCTGCGCGACAACCCGAGACTGACCAACCTGCTGAACGCAGTGGCCGa                                                                                                                                             <  1:321801/150‑1 (MQ=255)   gcTCGGTAGGTAACTCGCTGAACGACTTCTTCTACGAATCATTCCTGGACGAACTGGCGGACAAAGGTGGCAAGGACCCGTTTGAACTGCGCCTGCACCTGCTGCGCGACAACCCGAGACTGACCAACCTGCTGAACGCAGTGGCCGACt                                                                                                                                           <  1:203886/150‑1 (MQ=255)        gtaggtaACTCGCTGAACGACTTCTTCTACGAATCATTCCTGGACGAACTGGCGGACAAAGGTGGCAAGGACCCGTTTGAACTGGCGCTGTACCTGCTGCGCGACAACCCGAGACTGACCAACCTGCTGAACGCATTGGCCGACTTGTcc                                                                                                                                      >  2:243514/1‑150 (MQ=255)                       aaggagttcttcTACGAATCATTCCTGGACGAACTGGCGGACAAAGTTGGCAAGGACCCGTTTGAACTGCGCCTGCACCTGCTGCGCGACAACCCGAGACTGACCAACCTGCTGAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAgcgc                                                                                                                       >  2:250304/7‑150 (MQ=255)                          gACTTCTTCTACGAATCATTCCTGGACGAACTGGCGGACAAAGGTGGCAAGGACCCGTTTGAACTGCGCCTGCACCTGCTGCGCGACAACCCGAGACTGACCAACCTGCTGAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGa                                                                                                                    <  2:829263/150‑1 (MQ=255)                                                                cAAAGGTGGCAAGGACCCGTTTGAACTGCGCCTGCACCTGCTGCGCGACAACCCGAGACTGACCAACCTGCTGAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACgcgg                                                                              >  1:661713/1‑150 (MQ=255)                                                                        gCAAGGACCCGTTTGAACTGCGCCTGCACCTGCTGCGCGACAACCCGAGACTGACCAACCTGCTGAACGCAGccgccggacaagtcggccactgc                                                                                                                             <  2:737720‑M1/95‑24 (MQ=255)                                                                        gCAAGGACCCGTTTGAACTGCGCCTGCACCTGCTGCGCGACAACCCGAGACTGACCAACCTGCTGAACGCAGccgccggacaagtcggccactgc                                                                                                                             >  1:737720‑M1/1‑72 (MQ=255)                                                                            ggACCCGTTTGAACTGCGCCTGCACCTGCTGCGCGACAACCCGAGACTGACCAACCTGCTGAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTGGCCATGGc                                                                  >  1:415040/1‑150 (MQ=255)                                                                                   tttGAACTGCGCCTGCACCTGCTGCGCGACAACCCGAGACTGACCAACCTGCTGAACGCAGccgccggacaagtcggccactgcgt                                                                                                                           <  2:549245‑M1/86‑26 (MQ=255)                                                                                   tttGAACTGCGCCTGCACCTGCTGCGCGACAACCCGAGACTGACCAACCTGCTGAACGCAGccgccggacaagtcggccactgcgt                                                                                                                           >  1:549245‑M1/1‑61 (MQ=255)                                                                                   tttGAACTGCGCCTGCACCTGCTGCGCGACAACCCGAGACTGACCAACCTGCTGAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACgcggc                                                                             <  2:378959/132‑1 (MQ=255)                                                                                   tttGAACTGCGCCTGCACCTGCTGCGCGACAACCCGAGACTGACCAACCTGCTGAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACgcggc                                                                             >  1:378959/1‑132 (MQ=255)                                                                                   tttGAACTGCGCCTGCACCTGCTGCGCGACAACCCGAGACAGACCAACCTACAAAACGCAGGGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGCGGACGGCAGCAAGCGCGCACGCGGCGTGGCCATGGCCTCACCg                                                           >  2:247663/1‑150 (MQ=255)                                                                                               cTGCACCTGCTGCGCGACAACCCGAGACTGACCAACCTGCTGAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTGGCCATGGCCTCACCGTTCGGCTCGGAg                                               >  1:284775/1‑150 (MQ=255)                                                                                                      tgctgcGCGACAACCCGAGACTGACCAACCTGCTGAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTGGCCATGGCCTCa                                                              <  1:366931/128‑1 (MQ=255)                                                                                                      tgctgcGCGACAACCCGAGACTGACCAACCTGCTGAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTGGCCATGGCCTCa                                                              >  2:366931/1‑128 (MQ=255)                                                                                                           cgcgACAACCCGAGACTGACCAACCTGCTGAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTGGCCATGGCCTCACCGTTCGGCTCGGAGGCTGCGGTCAtt                                   <  1:250304/150‑1 (MQ=255)                                                                                                              gACAACCCGAGACTGACCAACCTGCTGAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTGGCCATg                                                                    <  2:690593/114‑1 (MQ=255)                                                                                                              gACAACCCGAGACTGACCAACCTGCTGAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTGGCCATGGCCTCACCGTTCGGCTCGGAGGCTGCGGTCATTGcc                                >  1:654199/1‑150 (MQ=255)                                                                                                              gACAACCCGAGACTGACCAACCTGCTGAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTGGCCATGGCCTCACCGTTCGGCTCGGAGGCTGCGGTCATTGcc                                >  1:616863/1‑150 (MQ=255)                                                                                                              gACAACCCGAGACTGACCAACCTGCTGAACGCAGTGGACGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTGGCCATg                                                                    >  1:690593/1‑114 (MQ=255)                                                                                                                    ccGAGACTGACCAACCTGCTGAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTGGCCATGGCCTCACCGTTCGGCTCGGAg                                               <  2:743457/129‑1 (MQ=255)                                                                                                                    ccGAGACTGACCAACCTGCTGAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTGGCCATGGCCTCACCGTTCGGCTCGGAg                                               >  1:743457/1‑129 (MQ=255)                                                                                                                    ccGAGACTGACCAACCTGCTGAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTGGCCATGGCCTCACCGTTCGGCTCGGAGGCTGCGGTCATTGCCGAGGtt                          >  2:332859/1‑150 (MQ=255)                                                                                                                        gaCTGACCAACCTGCTGAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTGGCCATGGCCTCACCGTTCGGCTCGGAGGCTGCGGTCATTGCCGAGGTTtcga                      <  1:119227/150‑1 (MQ=255)                                                                                                                             accaccCTGCTGAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTGGCCATGGCCTCACCGTTCGGCTCGGAGGCTGCGGTCATTGCCGAGGTTTCGATCGAc                 >  2:14860/1‑150 (MQ=255)                                                                                                                             aCCAACCTGCTGAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTg                                                                          <  2:845888/93‑1 (MQ=255)                                                                                                                             aCCAACCTGCTGAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTg                                                                          >  1:845888/1‑93 (MQ=255)                                                                                                                                    tgctgAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTGGCCATGGCCTCACCGTTCGGCTCGGAGGCTGCGGTCATTGCCGAGGTTTCGATCGACAACGGcc          >  1:810971/1‑150 (MQ=255)                                                                                                                                     gctgAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTGGCCATGGCCTCACCGTTCGGCTCGGAGGCTGCGGTCATTGCCGAGGTTTCGATCGACAACGGCCa         <  1:332859/150‑1 (MQ=255)                                                                                                                                         aaCGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTGGCCATGGCCTCACCGTTCGGCTCGGAGGCTGCGGTCATTGCCGAGGTTTCGATCGACAACGGCCAGGTc     >  2:791809/1‑150 (MQ=255)                                                                                                                                         aaCGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTGGCCATGGCCTCACCGTTCGGCTCGGAGGCTGCGGTCATTGCCGAGGTTTCGATCGACAACGGCCAGGTc     >  2:816389/1‑150 (MQ=255)                                                                                                                                          aCGCAGTGGCCGACTTGTCCGGCGGctgcgttcagcaggttggtcagtctcgggttgtcgcgcagcaggtgcaggcgcagttcaaa                                                                    <  2:549245‑M2/86‑62 (MQ=255)                                                                                                                                          aCGCAGTGGCCGACTTGTCCGGCGGctgcgttcagcaggttggtcagtctcgggttgtcgcgcagcaggtgcaggcgcagttcaaa                                                                    >  1:549245‑M2/1‑25 (MQ=255)                                                                                                                                           cGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTGGCCATGGCCTCACCGTTCGGCTCGGAGGCTGCGGTCATTGCCGAGGTTTCGATCGACAACGGCCAGGTCAg   <  2:810971/150‑1 (MQ=255)                                                                                                                                            gCAGTGGCCGACTTGTCCGGCGGctgcgttcagcaggttggtcagtctcgggttgtcgcgcagcaggtgcaggcgcagttcaaacgggtccttgc                                                         <  2:737720‑M2/95‑73 (MQ=255)                                                                                                                                            gCAGTGGCCGACTTGTCCGGCGGctgcgttcagcaggttggtcagtctcgggttgtcgcgcagcaggtgcaggcgcagttcaaacgggtccttgc                                                         >  1:737720‑M2/1‑23 (MQ=255)                                                                                                                                            gCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTGGCCATGGCCTCACCGTTCGGCTCGGAGGCTGCGGTCATTGCCGAGGTTTCGATCGACAACGGCCAGGTCAgg  <  2:284775/150‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                   GCGCTCGGTAGGTAACTCGCTGAACGACTTCTTCTACGAATCATTCCTGGACGAACTGGCGGACAAAGGTGGCAAGGACCCGTTTGAACTGCGCCTGCACCTGCTGCGCGACAACCCGAGACTGACCAACCTGCTGAACGCAGTGGCCGACTTGTCCGGCGGCTGGAAGCGCGGACCGTTCACCGCCGAGGACGGCAGCAAGCGCGCACGCGGCGTGGCCATGGCCTCACCGTTCGGCTCGGAGGCTGCGGTCATTGCCGAGGTTTCGATCGACAACGGCCAGGTCAGG  >  NC_002947/4118977‑4119265

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.