New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4157741 =	33 (1.040)	4 (0.140)	4/232	NT	11.0%	coding (182/888 nt)	PP_3660	LysR family transcriptional regulator
	?	NC_002947	4157772 =	34 (1.150)					coding (151/888 nt)	PP_3660	LysR family transcriptional regulator

CAGGTAAGGCAGCAGGTAACTGGCAGGCGTGGTACTGGCGCCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCTTGGGCCGCATGGCTGATGTTGCCGTGTTCGGCAACC  >  NC_002947/4157596‑4157890                                                                                                                                                  |                                                                                                                                                       ccagaacagctgataacgttcgccacggttgccgaacacggcaacatcagccatgcggcccaagccctgcacctgtctcagccggcggtgtccggccagctcaagctcttgcaagaggcgtttggcgagcccctttaccaacgtgccggc                                                                                                                                                    <  1:568450‑M1/5‑1 (MQ=255)                     tGGCAGGCGTGGTACTGGCGCCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCAcgccgc                                                                                                                                >  2:616183/1‑150 (MQ=255)                       gCAGGCTTGGTACTGGCGCCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGcgg                                                                                                                              >  2:807081/1‑150 (MQ=255)                        cacggttgccgaacacggcaacatcagccatgcggcccaagccctgcacctgtctcagccggcggtgtccggccagctcaagctcttgcaagaggcgtttggcgagcccctttaccaacgtgCCGGCCGCTGTCAGCCGCACGCCGcggc                                                                                                                             <  1:638214‑M1/28‑1 (MQ=255)                         aGGCGTGGTACTGGCGCCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGcggcc                                                                                                                            >  1:548168/1‑150 (MQ=255)                                        gcCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAg                                                                                                            <  2:251222/150‑1 (MQ=255)                                           gATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAgggg                                                                                                         <  1:461629/150‑1 (MQ=255)                                            aTGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGc                                                                                                        >  2:90352/1‑150 (MQ=255)                                                      tGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAggg                                                                                                          >  1:26367/1‑138 (MQ=255)                                                      tGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAggg                                                                                                          <  2:26367/138‑1 (MQ=255)                                                              tCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGc                                                                                      <  2:222653/150‑1 (MQ=255)                                                                cAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCaa                                                                                    >  1:79051/1‑150 (MQ=255)                                                                 aGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAag                                                                                   >  1:296553/1‑150 (MQ=255)                                                                  gCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAaga                                                                                  <  1:463399/150‑1 (MQ=255)                                                                      gcgcATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCtt                                                                              <  1:305927/150‑1 (MQ=255)                                                                       acctgtctcagccggcggtgtccggccagctcaagctcttgcaagaggcgtttggcgagcccctttaccaacgtgCCGGCCGCTGTCAGCCGCACGCCGcggccg                                                                                                                           <  2:226928‑M1/30‑1 (MQ=255)                                                                       acctgtctcagccggcggtgtccggccagctcaagctcttgcaagaggcgtttggcgagcccctttaccaacgtgCCGGCCGCTGTCAGCCGCACGCCGcggccg                                                                                                                           >  1:226928‑M1/76‑105 (MQ=255)                                                                         cATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAg                                                                           <  2:296553/150‑1 (MQ=255)                                                                         cATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAg                                                                           <  2:97991/150‑1 (MQ=255)                                                                            ggCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTg                                                                        <  2:587246/150‑1 (MQ=255)                                                                            ggCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTg                                                                        >  2:568450/1‑150 (MQ=255)                                                                             gCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAagag                                                                                 <  2:326554/140‑1 (MQ=255)                                                                             gCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAagag                                                                                 >  1:326554/1‑140 (MQ=255)                                                                                            tGCGCCTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGc                                                        <  2:146503/150‑1 (MQ=255)                                                                                            tGCGCCTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGc                                                        <  1:807081/150‑1 (MQ=255)                                                                                                 cTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGGC‑TCAGGTATGTTAAAGGGGCTCGCCAAAGGCCTCTTCGAAGAGCTTGAGCTGGCCGGACACCGCCGGCTgaga                                                   >  1:363128/1‑150 (MQ=255)                                                                                                  tGACGGAAGGTTTCGTGCCGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGAc                                                  >  2:293115/1‑150 (MQ=255)                                                                                                  tGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGAc                                                  >  2:381645/1‑150 (MQ=255)                                                                                                      ggAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGt                                              >  1:530161/1‑150 (MQ=255)                                                                                                        aaGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGa                                                                  >  1:21924/1‑128 (MQ=255)                                                                                                        aaGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGa                                                                  <  2:21924/128‑1 (MQ=255)                                                                                                                gcgcAGGCGCTCGGCATGCGCCAGCAAATGCTCCACGCTCGCGAAGTGCTGCAGCCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCTTg                                    <  1:616183/150‑1 (MQ=255)                                                                                                                        gcTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCTTGGGCCGCAt                            >  2:417925/1‑150 (MQ=255)                                                                                                                           cGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCTTGGGCCGCATGGc                         <  1:481738/150‑1 (MQ=255)                                                                                                                               gagcccctttaccaacgtgCCGGCCGCGGCGTGCGGCTGACAGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCTTGGGCCGCATGGCTGAt                     <  2:638214‑M1/131‑1 (MQ=255)                                                                                                                                    ccAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCTTGGGCCGCATGGCTGATGTTGc                <  2:530161/150‑1 (MQ=255)                                                                                                                                     cAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TTGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCTTGGGCCGCATGGCTGATGTTGcc               <  2:548168/150‑1 (MQ=255)                                                                                                                                          aCTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCTTGGGCCGCATGGCTGATGTTGCCGTGtt          <  1:90352/150‑1 (MQ=255)                                                                                                                                               tCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCTTGGGCCGCATGGc                         >  2:107517/1‑130 (MQ=255)                                                                                                                                               tCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCTTGGGCCGCATGGc                         <  1:107517/130‑1 (MQ=255)                                                                                                                                                  CCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCTTGGGCCGCATGGCTGATGTTGCCGTGTTCGGCAAcc  >  2:79051‑M1/1‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                                       CAGGTAAGGCAGCAGGTAACTGGCAGGCGTGGTACTGGCGCCGATGCGCACGGTGCCGCGCTCCAGCCCGCGCATGGCCTCGCGCAGCGCTTGCGCCTGACGGAAGGTTTCGCGCAGGCGCTCGGCATGCGCCAGCAACTGCTCACCGGCCGCTGTCAGCCGCACGCCGCGGCCGGCACGT‑TGGTAAAGGGGCTCGCCAAACGCCTCTTGCAAGAGCTTGAGCTGGCCGGACACCGCCGGCTGAGACAGGTGCAGGGCTTGGGCCGCATGGCTGATGTTGCCGTGTTCGGCAACC  >  NC_002947/4157596‑4157890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.