New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4334176 = | 51 (1.610) | 4 (0.130) | 4/236 | NT | 7.0% | coding (65/1053 nt) | yaiW | lipoprotein |
? | NC_002947 | 4334214 = | 58 (1.920) | coding (27/1053 nt) | yaiW | lipoprotein |
TGTTCGGTCACCGCCAGCACTGCGCACAGGTTGCTTTTACTGGGCGCTATGCGCTGGGCTTCGAAGGCTGCCTGGATATCCTTGGCCCAACCCTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTAACCGGCCGTTCAGGGCTGTTCACCGATCAGGTAGGTTTTGCTGATGTGGCGGAACTGCGGG > NC_002947/4334029‑4334318 | ggTTCGGGCACGGCCAGCAGTGGGCACAGGTTGCTTTTGCTGGGCGCTATGCGCTGGGCTTCGAAGGCTGCCTGGATATCCTTGGCCCAACCCGCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGcc < 2:641578/149‑1 (MQ=255) ccgcgagatggtgttgttcgaattgatgggcagtgccgggcacccgcagttccgccacatcagcaaaacctacctgatcggtgaacagccctgaacggccggttactggccatttcggtgatggccctggtgctgttgcaaggctgtGcc < 2:158719‑M1/3‑1 (MQ=255) ccgcgagatggtgttgttcgaattgatgggcagtgccgggcacccgcagttccgccacatcagcaaaacctacctgatcggtgaacagccctgaacggccggttactggacgacgcggtgatggccctggtgctgttgcaaggctgtGcc < 1:684303‑M1/3‑1 (MQ=255) gTTCGGTCACCGCCAGCACTGCGCACAGGTTGCTTTTACTGGGCGCTATGCGCTGGGCTTCGAAGGCTGCCTGGATATCCTTGGCCCAACCCTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCg > 2:541315/1‑150 (MQ=255) gTTGCTTTTACTGGGCGCTATGCGCTGGGCTTCGAAGGCTGCCTGGATATCCTTGGCCCAACCCTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCgcggcg > 2:456506/1‑150 (MQ=255) ttttACTGGGCGCTATGCGCTGGGCTTCGAAGGCTGCCTGGATATCCTTGGCCCAACCCTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCgg < 1:746974/150‑1 (MQ=255) gggCGCTATGCGCTGGGCTTCGAAGGCTGCCTGGATATCCTTGGCCCAACCCTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGcc > 1:525567/1‑150 (MQ=255) gcgcTATGCGCTGGGCTTCGAAGGCTGCCTGGATATCCTTGGCCCAACCCTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCtt > 1:252406/1‑150 (MQ=255) gcTATGCGCTGGGCTTCGAAGGCTGCCTGGATATCCTTGGCCCAACCCTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGc < 2:781027/150‑1 (MQ=255) cgatctcgcTGGGCTTCGACGGATGGCTGGATATTCTTGGCCCAACCCTCTCGGTCCTTGACCTGGGCTGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGc < 2:310125/144‑1 (MQ=255) tATGCGCTGGGCTTCGAAGGCTGCCTGGATATCCTTGGCCCAACCCTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCaa > 1:584242/1‑150 (MQ=255) gcTGGGCTTCGAAGGCTGCCTGGATATCCTTGGCCCAACCCTCGCGGTCCTTGACCTGGGAGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCaagatcg > 1:310125/1‑145 (MQ=255) cgccacatcagcaaaacctacctgatcggtgaacagccctgaacggccggttactggccatttcggtgatggccctggtgctgttgcaaggctgtGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCg > 2:738841‑M1/96‑131 (MQ=255) cgccacatcagcaaaacctacctgatcggtgaacagccctgaacggccggttactggccatttcggtgatggccctggtgctgttgcaaggctgtGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCg < 1:738841‑M1/36‑1 (MQ=255) ttCGAAGGCTGCCTGGATATCCTTGGCCCAACCCTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGc > 1:81344/1‑150 (MQ=255) ttCGAAGGCTGCCTGGATATCCTTGGCCCAACCCTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGc > 2:620528/1‑150 (MQ=255) ttCGAAGGCTGCCTGGATATCCTTGGCCCAACCCTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCCCCGGGCCCGCTCCGGGCGCTTCGTCGCGGCGGCCGGC‑CCAGCCTCGCAGCGGCGCCCGGGc > 2:620712/1‑150 (MQ=255) tcagcaaaacctacctgatcggtgaacagccctgaacggccggttactggccatttcggtgatggccctggtgctgttgcaaggctgtGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGcc > 1:3299‑M1/89‑122 (MQ=255) tcagcaaaacctacctgatcggtgaacagccctgaacggccggttactggccatttcggtgatggccctggtgctgttgcaaggctgtGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGcc < 2:3299‑M1/34‑1 (MQ=255) aaGGCTGCCTGGATATCCTTGGCCCAACCCTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGcttctt < 2:601752/109‑1 (MQ=255) aaGGCTGCCTGGATATCCTTGGCCCAACCCTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGcttctt > 1:601752/1‑109 (MQ=255) aaGGCTGCCTGGATATCCTTGGCCCAACCCTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATc < 1:703062/150‑1 (MQ=255) aaGGCTGCCTGGATATCCTTGGCCCAACCCTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATc > 2:420340/1‑150 (MQ=255) tcgATCTCCTTGGCCCAACCCTCGCGGGCCGTGACCTGGGCGGGTAACAGCCGCAACCGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCCTCGCGGCGCCCGGC‑ACCGCCTTGCAACAGCACCAGGGCGATCACCGAAATg < 1:620712/148‑1 (MQ=255) tGGATATCCTTGGCCCAACCCTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATg < 1:620528/150‑1 (MQ=255) cTTGGCCCAACCCTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTaa > 1:158719/1‑150 (MQ=255) cTTGGCCCAACCCTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTaa > 2:330066/1‑150 (MQ=255) ccAACCCTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTAACCGGcc < 1:541315/150‑1 (MQ=255) ccAACCCTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTCCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTAACCGGcc < 2:261054/150‑1 (MQ=255) cAACCCTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑AAAGCGTTGCATGAGCACCGGGGCCATCACCGAAATGGCCAGTAACCGGCCg > 1:696642/1‑150 (MQ=255) aCCCTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTAACCGGCCGtt < 2:252406/150‑1 (MQ=255) cTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATg < 2:255274/130‑1 (MQ=255) cTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATg > 1:255274/1‑130 (MQ=255) cTCGCGGTCCTTGACCGGGGCGGGGAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGTCATCACCGAAATGGCCAGTAACCGGCCGTTCAg < 2:61283/150‑1 (MQ=255) cgcgGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTAACCGGCCGTTCAggg < 1:166797/150‑1 (MQ=255) cTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTAACCGGCCGTTCAGGGCTGTTCa > 1:714404/1‑150 (MQ=255) ttGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTAACCGGCCGTTCAGGGCTGTTCAc < 1:330066/150‑1 (MQ=255) tGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTAACCGGCCGTTCAGGGCTGTTCAcc > 1:840266/1‑150 (MQ=255) cTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCtt < 2:658264/86‑1 (MQ=255) cTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCtt > 1:658264/1‑86 (MQ=255) gggCGGGTAACAGCGGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTAGCCGC‑CCAGGCTATAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTACCCGGCCGTTCAGGGCTGTTCACCGATCag < 2:69617/150‑1 (MQ=255) gggTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTAACCGGCCGTTCAGGGCTGTTCACCGATCaggtag < 1:420340/150‑1 (MQ=255) gTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTAACCGGCCGTTCAGGGCTGTTCACCGATCaggtaggt > 1:597178/1‑150 (MQ=255) gTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTAACCGGCCGTTCAGGGCTGTTCACCGATCaggtaggt > 1:601148/1‑150 (MQ=255) aaCAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTAACCGGCCGTTCAGGGCTGTTCACCGa < 2:808620/138‑1 (MQ=255) aaCAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTAACCGGCCGTTCAGGGCTGTTCACCGa > 1:808620/1‑138 (MQ=255) gCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTAACCGGCCGTTCAGTGCTGTTCACCGATCAGGTAGGTTTTGCTGAt < 2:525567/150‑1 (MQ=255) aaCAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCtt < 2:814188/67‑1 (MQ=255) aaCAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCtt > 1:814188/1‑67 (MQ=255) cgcACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTAACCGGCCGtt < 2:8283/105‑1 (MQ=255) cgcACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTAACCGGCCGtt > 1:8283/1‑105 (MQ=255) aCGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTAACCGGCCGTTCAGGGCTGTTCACCGATCag < 2:253485/122‑1 (MQ=255) aCGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTAACCGGCCGTTCAGGGCTGTTCACCGATCag > 1:253485/1‑122 (MQ=255) aCGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGCCCAGTAACCGGCCGTTCAGGGCTGTTCACCGATCAGGTAGGTTTTGCTGATGTGGCGGAACTGc > 2:163869/1‑150 (MQ=255) cGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGCCCAGTAACCGGCCGTTCAGGGCTGTTCACCGATCAGGTAGGTTTTGCTGATGTGGCGGAACTGCg < 1:163869/150‑1 (MQ=255) ggtgtttCGCCGGGTCCGCGTGGGGGGGTTCTTTGCGGCGCTGGGC‑ACAGCGTTGGAACGGCACCAGGGCGATCACCGAAATGGCTAGTAACCGGCCGTTCCGGGCTGTGCACCGATCAGGTAGGTTTTGCTGATGTGGCTGAACTGCgg < 2:182319/146‑1 (MQ=255) ggACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTAACCTGCCGTTCAGGGCTGTTCACCGATCAGGTAGGTTTTGCTGATGTGGCGGAACTGCgg > 2:760974/1‑150 (MQ=255) ggACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTAACCGGCCGTTCAGGGCTGTTCACCGATCAGGTAGGTTTTGCTGATGTGGCGGAACTGCgg < 2:601148/150‑1 (MQ=255) gACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTAGCCGGCCGTTCAGGGCTGTTCACCGCTCAGGAGTGGGTTGCTGATGTGGCGGAACTGCggg > 1:641609/1‑150 (MQ=255) gACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTAACCGGCCGTTCAGGGCTGTTCACCGATCAGGTAGGTTTTGCTGATGTGGCGGAACTGCggg > 2:586685/1‑150 (MQ=255) tttCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCAcc > 2:275306/1‑73 (MQ=255) tttCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCAcc < 1:275306/73‑1 (MQ=255) | TGTTCGGTCACCGCCAGCACTGCGCACAGGTTGCTTTTACTGGGCGCTATGCGCTGGGCTTCGAAGGCTGCCTGGATATCCTTGGCCCAACCCTCGCGGTCCTTGACCTGGGCGGGTAACAGCCGCAACAGCTGCGCACGGACTTTCGCCGGGTCCGCTTCGGGCGCTTCTTCGCGGCGCCCGGC‑ACAGCCTTGCAACAGCACCAGGGCCATCACCGAAATGGCCAGTAACCGGCCGTTCAGGGCTGTTCACCGATCAGGTAGGTTTTGCTGATGTGGCGGAACTGCGGG > NC_002947/4334029‑4334318 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |