New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4710366 =	42 (1.330)	6 (0.200)	6/236	NT	13.2%	coding (160/348 nt)	PP_4168	hypothetical protein
	?	NC_002947	4710383 =	39 (1.290)					coding (143/348 nt)	PP_4168	hypothetical protein

GGTGCCACGGCGTGCGCTGCTTCACCTTCCGGCGCACGCGGGGCCGGCCAGTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTCGCGCTGGGCGCGTTCGGG  >  NC_002947/4710218‑4710513                                                                                                                                                     |                                                                                                                                                     aacacatgaacgatacgcccgaacgcgcccagcgcgagtcgatcatcctgcgggtgctgtggatgctggtgttcctggtggtctggcaactggccgagttgctgttgggtggcctggtgctggtacagctgatctaccgactggtgtaTg                                                                                                                                                     <  1:526728‑M1/2‑1 (MQ=255)  gTGCCACGGCGTGCGCTGCTTCACCTTCCGGCGCACGCGGGGCCGGCCAGGCTGCGAACGGCAACGGCTTCTGGTCTGTGTGGCAAGTGCCGAAGCGGCCGCTCGCTGCCCGGTACCGGCTCAGACTGGCGCCGAATGGCATCAGTCTgg                                                                                                                                                    >  2:144603/1‑150 (MQ=255)  acacatgaacgatacgcccgaacgcgcccagcgcgagtcgatcatcctgcgggtgctgtggatgctggtgttcctggtggtctggcaactggccgagttgctgttgggtggcctggtgctggtacagctgatctaccgactggtgtaTgg                                                                                                                                                    <  2:591308‑M1/3‑1 (MQ=255)         ggCGTGCGCTGCTTCACCTTCCGGCGCACGCGGGGCCGGCCAGTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTggg                                                                                                                                             <  1:527094/150‑1 (MQ=255)            gTGCGCTGCTTCACCTTCCGGCGCACGCGGGGCCGGCCAGTCTGCGAATGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGgc‑gc                                                                                                                                         <  1:269561/150‑1 (MQ=255)                 gcccgaacgcgcccagcgcgagtcgatcatcctgcgggtgctgtggatgctggtgttcctggtggtctggcaactggccgagttgctgttgggtggcctggtgctggtacagctgatctaccgactggtgtaTGGCGCTGGGC‑GCGCCAt                                                                                                                                    <  1:580559‑M1/18‑1 (MQ=255)                  cccgaacgcgcccagcgcgagtcgatcatcctgcgggtgctgtggatgctggtgttcctggtggtctggcaactggccgagttgctgttgggtggcctggtgctggtacagctgatctaccgactggtgtaTGGCGCTGGGC‑GCGCCATa                                                                                                                                   >  1:528527‑M1/132‑150 (MQ=255)                    cgaacgcgcccagcgcgagtcgatcatcctgcgggtgctgtggatgctggtgttcctggtggtctggcaactggccgagttgctgttgggtggcctggtgctggtacagctgatctaccgactggtgtaTGGCGCTGGGC‑GCGCCATaca                                                                                                                                 >  2:580559‑M1/130‑150 (MQ=255)                     ttCACCTTCCGGCGCACGCGGGGCCGGCCAGTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATacac                                                                                                                                >  1:155641/1‑150 (MQ=255)                     ttCACCTTCCGGCGCACGCGGGGCCGGCCAGTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATacac                                                                                                                                <  1:144603/150‑1 (MQ=255)                      tCACCTTCCGGCGCACGCGGGGCCGGCCAGTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACAcc                                                                                                                               >  1:214771/1‑150 (MQ=255)                             ccGGCGCACGCGGGGCCGGCCAGTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGAGC‑GCGCCATACACCAGTCGGt                                                                                                                        <  2:82290/150‑1 (MQ=255)                                     cgcgGGGCCGGCCAGTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTTGGTAGATCAGc                                                                                                                <  2:503807/150‑1 (MQ=255)                                      gcgGGGCCGGCCAGTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCt                                                                                                               <  2:155641/150‑1 (MQ=255)                                          ggccggccAGTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTgg                                                                                                                                              <  2:731916/116‑1 (MQ=255)                                          ggccggccAGTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTgg                                                                                                                                              >  1:731916/1‑116 (MQ=255)                                              ggccAGTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGc                                                                                                       >  2:273225/1‑150 (MQ=255)                                               gccAGTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCa                                                                                                      >  1:182969/1‑150 (MQ=255)                                                   gTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAg                                                                                                  <  2:537654/150‑1 (MQ=255)                                                   gTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAg                                                                                                  <  1:273225/150‑1 (MQ=255)                                                         gAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCAcc                                                                                            >  2:224189/1‑150 (MQ=255)                                                         gAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGAG‑GCGCCATACAATAGTCGGGAGATCAGCTGTACAAGGACAAGGCCAcc                                                                                            >  2:354670/1‑150 (MQ=255)                                                              gCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACa                                                                                       <  1:557252/150‑1 (MQ=255)                                                                             cGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCAGCCAACAGCAACTCGGCCAGtt                                                                        >  2:440356/1‑150 (MQ=255)                                                                              gCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTg                                                                       >  1:165621/1‑150 (MQ=255)                                                                               cTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCACCACCACGCCACCCAACAGCAACTCGGCCAGTTGc                                                                      <  1:660005/150‑1 (MQ=255)                                                                                tgtgGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACa                                                                                       <  2:435736/132‑1 (MQ=255)                                                                                tgtgGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACa                                                                                       >  1:435736/1‑132 (MQ=255)                                                                                tgtgGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGcc                                                                     >  1:809870/1‑150 (MQ=255)                                                                                         tGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTGGCCGAGTTGctgttggg                                                               >  2:338636/1‑140 (MQ=255)                                                                                         tGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTGGCCGAGTTGctgttggg                                                               <  1:338636/147‑8 (MQ=255)                                                                                              aaGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCGGCAACAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAac                                                       >  1:609483/1‑150 (MQ=255)                                                                                                 cGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACAcc                                                    >  2:586651/1‑150 (MQ=255)                                                                                                               cAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCAc                                      >  2:738719/1‑150 (MQ=255)                                                                                                                       ggCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGga                              <  1:586651/150‑1 (MQ=255)                                                                                                                        gCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCaa                                                                                         <  1:611396/90‑1 (MQ=255)                                                                                                                        gCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCaa                                                                                         >  2:611396/1‑90 (MQ=255)                                                                                                                        gCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCAAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGgat                             >  2:625625/1‑150 (MQ=255)                                                                                                                          tCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGgatga                           >  1:199874/1‑150 (MQ=255)                                                                                                                              aCTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGa                       <  2:182969/150‑1 (MQ=255)                                                                                                                               cTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCAAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGAc                      <  1:625625/150‑1 (MQ=255)                                                                                                                                tGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGac                                                                 >  1:418508/1‑106 (MQ=255)                                                                                                                                tGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGac                                                                 <  2:418508/106‑1 (MQ=255)                                                                                                                                tGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACt                     >  1:410723/1‑150 (MQ=255)                                                                                                                                 ctgatctaccgactggtgtaTGGCGC‑GCCCAGCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTc                    <  2:526728‑M1/130‑1 (MQ=255)                                                                                                                                    gCCGAAGTTCATCAGGCTGGCGCTGAGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTcgcg                 >  2:400858/1‑150 (MQ=255)                                                                                                                                        aaGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTCGCGCTgg             <  1:738719/150‑1 (MQ=255)                                                                                                                                           gactggtgtaTGGCGCGCCCA‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCg                                                                               <  2:463593‑M1/71‑1 (MQ=255)                                                                                                                                           gactggtgtaTGGCGCGCCCA‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCg                                                                               >  1:463593‑M1/11‑81 (MQ=255)                                                                                                                                              atcaGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTCGCGCTGGGCGCGt       >  1:591308/1‑150 (MQ=255)                                                                                                                                              atcaGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAAACCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTCGCGCTGGGCGCGt       >  1:484241/1‑150 (MQ=255)                                                                                                                                                caGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTCGCGCTGGGCGCGTTc     <  1:440356/150‑1 (MQ=255)                                                                                                                                                  ggCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTCGCGCTGGGCGCGTTCgg   >  2:358489/1‑150 (MQ=255)                                                                                                                                                   gCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTCGCGCTGGGCGCGTTCggg  >  2:491924/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GGTGCCACGGCGTGCGCTGCTTCACCTTCCGGCGCACGCGGGGCCGGCCAGTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTCGCGCTGGGCGCGTTCGGG  >  NC_002947/4710218‑4710513

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.