New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4710366 =	42 (1.330)	6 (0.200)	6/236	NT	13.2%	coding (160/348 nt)	PP_4168	hypothetical protein
	?	NC_002947	4710383 =	39 (1.290)					coding (143/348 nt)	PP_4168	hypothetical protein

CTGCTTCACCTTCCGGCGCACGCGGGGCCGGCCAGTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTCGCGCTGGGCGCGTTCGGGCGTATCGTTCATGTGTTGC  >  NC_002947/4710234‑4710532                                                                                                                                                       |                                                                                                                                                      gcccgaacgcgcccagcgcgagtcgatcatcctgcgggtgctgtggatgctggtgttcctggtggtctggcaactggccgagttgctgttgggtggcctggtgctggtacagctgatctaccgactggtgtaTGGCGCTGGGC‑GCGCCAt                                                                                                                                                       <  1:580559‑M1/18‑1 (MQ=255)  cccgaacgcgcccagcgcgagtcgatcatcctgcgggtgctgtggatgctggtgttcctggtggtctggcaactggccgagttgctgttgggtggcctggtgctggtacagctgatctaccgactggtgtaTGGCGCTGGGC‑GCGCCATa                                                                                                                                                      >  1:528527‑M1/132‑150 (MQ=255)    cgaacgcgcccagcgcgagtcgatcatcctgcgggtgctgtggatgctggtgttcctggtggtctggcaactggccgagttgctgttgggtggcctggtgctggtacagctgatctaccgactggtgtaTGGCGCTGGGC‑GCGCCATaca                                                                                                                                                    >  2:580559‑M1/130‑150 (MQ=255)     ttCACCTTCCGGCGCACGCGGGGCCGGCCAGTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATacac                                                                                                                                                   >  1:155641/1‑150 (MQ=255)     ttCACCTTCCGGCGCACGCGGGGCCGGCCAGTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATacac                                                                                                                                                   <  1:144603/150‑1 (MQ=255)      tCACCTTCCGGCGCACGCGGGGCCGGCCAGTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACAcc                                                                                                                                                  >  1:214771/1‑150 (MQ=255)             ccGGCGCACGCGGGGCCGGCCAGTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGAGC‑GCGCCATACACCAGTCGGt                                                                                                                                           <  2:82290/150‑1 (MQ=255)                     gagtcgatcatcctgcgggtgctgtggatgctggtgttcctggtggtctggcaactggccgagttgctgttgggtggcctggtgctggtacagctgatctaccgactggtgtatggcgctgggcgcgccaTACACCAGTCGGTAGATCAg                                                                                                                                    <  2:526728‑M2/20‑1 (MQ=255)                     cgcgGGGCCGGCCAGTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTTGGTAGATCAGc                                                                                                                                   <  2:503807/150‑1 (MQ=255)                      gcgGGGCCGGCCAGTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCt                                                                                                                                  <  2:155641/150‑1 (MQ=255)                              ggccAGTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGc                                                                                                                          >  2:273225/1‑150 (MQ=255)                               gccAGTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCa                                                                                                                         >  1:182969/1‑150 (MQ=255)                                   gTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAg                                                                                                                     <  1:273225/150‑1 (MQ=255)                                   gTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAg                                                                                                                     <  2:537654/150‑1 (MQ=255)                                         gAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCAcc                                                                                                               >  2:224189/1‑150 (MQ=255)                                         gAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGAG‑GCGCCATACAATAGTCGGGAGATCAGCTGTACAAGGACAAGGCCAcc                                                                                                               >  2:354670/1‑150 (MQ=255)                                              gCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACa                                                                                                          <  1:557252/150‑1 (MQ=255)                                                             cGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCAGCCAACAGCAACTCGGCCAGtt                                                                                           >  2:440356/1‑150 (MQ=255)                                                              gCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTg                                                                                          >  1:165621/1‑150 (MQ=255)                                                               cTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCACCACCACGCCACCCAACAGCAACTCGGCCAGTTGc                                                                                         <  1:660005/150‑1 (MQ=255)                                                                tgtgGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACa                                                                                                          >  1:435736/1‑132 (MQ=255)                                                                tgtgGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACa                                                                                                          <  2:435736/132‑1 (MQ=255)                                                                tgtgGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGcc                                                                                        >  1:809870/1‑150 (MQ=255)                                                                         tGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTGGCCGAGTTGctgttggg                                                                                  >  2:338636/1‑140 (MQ=255)                                                                         tGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTGGCCGAGTTGctgttggg                                                                                  <  1:338636/147‑8 (MQ=255)                                                                              aaGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCGGCAACAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAac                                                                          >  1:609483/1‑150 (MQ=255)                                                                                cgagttgctgttgggtggcctggtgctggtacagctgatctaccgactggtgtatggcgctgggcgcgccaTACACCAGTc                                                                                                                                              >  1:463593‑M2/72‑81 (MQ=255)                                                                                cgagttgctgttgggtggcctggtgctggtacagctgatctaccgactggtgtatggcgctgggcgcgccaTACACCAGTc                                                                                                                                              <  2:463593‑M2/10‑1 (MQ=255)                                                                                 cGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACAcc                                                                       >  2:586651/1‑150 (MQ=255)                                                                                               cAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCAc                                                         >  2:738719/1‑150 (MQ=255)                                                                                                       ggCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGga                                                 <  1:586651/150‑1 (MQ=255)                                                                                                        gCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCaa                                                                                                            <  1:611396/90‑1 (MQ=255)                                                                                                        gCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCaa                                                                                                            >  2:611396/1‑90 (MQ=255)                                                                                                        gCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCAAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGgat                                                >  2:625625/1‑150 (MQ=255)                                                                                                          tCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGgatga                                              >  1:199874/1‑150 (MQ=255)                                                                                                              aCTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGa                                          <  2:182969/150‑1 (MQ=255)                                                                                                               cTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCAAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGAc                                         <  1:625625/150‑1 (MQ=255)                                                                                                                tGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGac                                                                                    <  2:418508/106‑1 (MQ=255)                                                                                                                tGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGac                                                                                    >  1:418508/1‑106 (MQ=255)                                                                                                                tGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACt                                        >  1:410723/1‑150 (MQ=255)                                                                                                                 ctgatctaccgactggtgtaTGGCGC‑GCCCAGCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTc                                       <  2:526728‑M1/130‑1 (MQ=255)                                                                                                                    gCCGAAGTTCATCAGGCTGGCGCTGAGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTcgcg                                    >  2:400858/1‑150 (MQ=255)                                                                                                                        aaGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTCGCGCTgg                                <  1:738719/150‑1 (MQ=255)                                                                                                                           gactggtgtaTGGCGCGCCCA‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCg                                                                                                  <  2:463593‑M1/71‑1 (MQ=255)                                                                                                                           gactggtgtaTGGCGCGCCCA‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCg                                                                                                  >  1:463593‑M1/11‑81 (MQ=255)                                                                                                                              atcaGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTCGCGCTGGGCGCGt                          >  1:591308/1‑150 (MQ=255)                                                                                                                              atcaGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAAACCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTCGCGCTGGGCGCGt                          >  1:484241/1‑150 (MQ=255)                                                                                                                                caGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTCGCGCTGGGCGCGTTc                        <  1:440356/150‑1 (MQ=255)                                                                                                                                  tgtatggcgcgcccagcgccaTACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTCGCGCTGGGCGCGTTCg                       >  2:580559‑M2/22‑150 (MQ=255)                                                                                                                                  ggCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTCGCGCTGGGCGCGTTCgg                      >  2:358489/1‑150 (MQ=255)                                                                                                                                   gCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTCGCGCTGGGCGCGTTCggg                     >  2:491924/1‑150 (MQ=255)                                                                                                                                    tatggcgcgcccagcgccaTACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTCGCGCTGGGCGCGTTCggg                     >  1:528527‑M2/20‑150 (MQ=255)                                                                                                                                     atggcgcgcccagcgccaTACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTCGCGCTGGGCGCGTTCGGGc                    <  1:580559‑M2/132‑1 (MQ=255)                                                                                                                                                    ccaTACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTCGCGCTGGGCGCGTTCGGGCGTATCGTTCATgtgt     <  2:591308‑M2/147‑1 (MQ=255)                                                                                                                                                     caTACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTCGCGCTGGGCGCGTTCGGGCGTATCGTTCATGTGtt    <  1:526728‑M2/148‑1 (MQ=255)                                                                                                                                                       tACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTCGCGCTGGGCGCGTTCGGGCGTATCGTTCATGTGTTGc  <  1:358489/150‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                      CTGCTTCACCTTCCGGCGCACGCGGGGCCGGCCAGTCTGCGAACGGCCACGGCTTCTGGTCGCTGTGGAAACTGCCGAAGCGGCCGATCTGTGCCAGGTACTGGCTCAGACTGTCGCCGAAGTTCATCAGGCTGGCGCTGGGC‑GCGCCATACACCAGTCGGTAGATCAGCTGTACCAGCACCAGGCCACCCAACAGCAACTCGGCCAGTTGCCAGACCACCAGGAACACCAGCATCCACAGCACCCGCAGGATGATCGACTCGCGCTGGGCGCGTTCGGGCGTATCGTTCATGTGTTGC  >  NC_002947/4710234‑4710532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.