New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4726117 =	49 (1.550)	4 (0.130)	4/240	NT	7.8%	coding (1311/1314 nt)	brnQ	branched‑chain amino acid transporter
	?	NC_002947	4726160 =	47 (1.530)					coding (1268/1314 nt)	brnQ	branched‑chain amino acid transporter

AATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCT  >  NC_002947/4725968‑4726260                                                                                                                                                      |                                                                                                                                                aaTGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAg                                                                                                                                                 <  1:780358/150‑1 (MQ=255)                      cGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTg                                                                                                                            <  1:800004/150‑1 (MQ=255)                             aaCAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCa                                                                                                                     >  1:837290/1‑150 (MQ=255)                             aaCAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCa                                                                                                                     >  1:837283/1‑150 (MQ=255)                                aGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGc                                                                                                                  >  2:161396/1‑150 (MQ=255)                                    gatcaagggcagcagccttgcccacgtgttgccagacttcatggcgcacctgccattgagtgatgccggcatggcctggctggtaccttcggtggtgaccctggtgggtgccgtGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTc                                                                                                              <  2:129805‑M1/36‑1 (MQ=255)                                    aaaCAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTc                                                                                                              >  1:198573/1‑150 (MQ=255)                                       cAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCa                                                                                                           >  2:748519/1‑150 (MQ=255)                                        aagggcagcagccttgcccacgtgttgccagacttcatggcgcacctgccattgagtgatgccggcatggcctggctggtaccttcggtggtgaccctggtgggtgccgtGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAg                                                                                                          >  1:129805‑M1/111‑150 (MQ=255)                                        aGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAg                                                                                                          >  1:583044/1‑150 (MQ=255)                                                 ccccGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCCCCCTTGGCGAGCACCCTTAGGCTTGTGGCCGGGGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGca                                                                                                 >  1:466157/1‑150 (MQ=255)                                                  cccGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGcac                                                                                                >  1:580744/1‑150 (MQ=255)                                                  cccGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGAGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGcac                                                                                                >  2:787996/1‑150 (MQ=255)                                                           tttCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAggg                                                                                       >  1:507436/1‑150 (MQ=255)                                                                      gggCTCTCTTGTTTTCACCCTTGGCGAGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGGGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGaa                                                                            <  1:787996/150‑1 (MQ=255)                                                                      gggCTCTCTTGTTTTCACCCTTAGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGaa                                                                            <  1:634080/150‑1 (MQ=255)                                                                           ctctTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTa                                                                        >  1:307100/1‑149 (MQ=255)                                                                           ctctTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTa                                                                        <  2:307100/149‑1 (MQ=255)                                                                           ctctTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTAc                                                                       >  2:618737/1‑150 (MQ=255)                                                                              ttGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCACACGACGGCACCCACCAGGGTCACCACCGAAGGTAccag                                                                    >  1:262363/1‑150 (MQ=255)                                                                              acgtgttCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTAccag                                                                    >  1:670320/6‑150 (MQ=255)                                                                                   ttCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGTAGGTACCAGCCAgg                                                               <  2:780201/150‑1 (MQ=255)                                                                                        ccTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGTCAAGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATg                                                          >  1:362796/1‑150 (MQ=255)                                                                                           tGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCg                                                       <  1:312652/150‑1 (MQ=255)                                                                                           tGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCg                                                       <  1:618737/150‑1 (MQ=255)                                                                                                  cACCCTCCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCAc                                                <  2:475524/150‑1 (MQ=255)                                                                                                      cTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCaa                                            <  2:580744/150‑1 (MQ=255)                                                                                                      cTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCaa                                            >  1:143954/1‑150 (MQ=255)                                                                                                            cTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAg                                      >  2:810606/1‑150 (MQ=255)                                                                                                             ttGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGc                                                         >  1:161145/1‑130 (MQ=255)                                                                                                             ttGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGc                                                         <  2:161145/130‑1 (MQ=255)                                                                                                             ttGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAgg                                     <  2:837283/150‑1 (MQ=255)                                                                                                             ttGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAgg                                     >  2:631321/1‑150 (MQ=255)                                                                                                             ttGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAgg                                     <  2:837290/150‑1 (MQ=255)                                                                                                               ctggctggtaccttcggtggtgaccctggtgggtgccgtGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGc                                                                                                  >  2:754563‑M1/40‑87 (MQ=255)                                                                                                               ctggctggtaccttcggtggtgaccctggtgggtgccgtGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGc                                                                                                  <  1:754563‑M1/48‑1 (MQ=255)                                                                                                                tgGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTAcca                                                                     >  2:306214/1‑115 (MQ=255)                                                                                                                tgGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTAcca                                                                     <  1:306214/115‑1 (MQ=255)                                                                                                                  gCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTgcgc                                >  2:592364/1‑150 (MQ=255)                                                                                                                        gccgccCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGaa                          <  1:810606/150‑1 (MQ=255)                                                                                                                        gccgccCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGaa                          <  2:143954/150‑1 (MQ=255)                                                                                                                              cTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTgcgc                                >  2:512749/1‑138 (MQ=255)                                                                                                                              cTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTgcgc                                <  1:512749/138‑1 (MQ=255)                                                                                                                              cTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTgg                    <  2:507436/150‑1 (MQ=255)                                                                                                                              cTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTgg                    <  1:592364/150‑1 (MQ=255)                                                                                                                                cAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGc                   >  2:502277/1‑149 (MQ=255)                                                                                                                                cAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGc                   <  1:502277/149‑1 (MQ=255)                                                                                                                                      tCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGt            <  2:366791/150‑1 (MQ=255)                                                                                                                                        cACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTgg          <  1:122379/150‑1 (MQ=255)                                                                                                                                          cTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTAccagccag                                                                >  2:213876/1‑94 (MQ=255)                                                                                                                                          cTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTAccagccag                                                                <  1:213876/94‑1 (MQ=255)                                                                                                                                           ttGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCa       >  1:553552/1‑150 (MQ=255)                                                                                                                                              tCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAgg    >  1:241959/1‑150 (MQ=255)                                                                                                                                                cGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGgct  <  2:362796/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                AATGCATTACCTGCTGCGAAGCGGCCGAAACAGGCAAACAGCAAAAAGCCCCGCATCCTTTCGGAGACGGGGCTCTCTTGTTTTCACCCTTGGCGGGCACCCTTCGGCTTGTGGCCGGTGCCGCCCTCAGGCTTCCACTTGTCCGGTCAGGCCAGCGCCTCGCGCGGCTTGCCGAGCATGCGGTCGCAGGCCACGGCACCCACCAGGGTCACCACCGAAGGTACCAGCCAGGCCATGCCGGCATCACTCAATGGCAGGTGCGCCATGAAGTCTGGCAACACGTGGGCAAGGCT  >  NC_002947/4725968‑4726260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.