New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4782082	25 (0.790)	5 (0.160)	5/240	NT	16.3%	coding (5277/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
	?	NC_002947	= 4782102	27 (0.880)					coding (5257/7887 nt)	pvdJ	non‑ribosomal peptide synthetase

CAGTGCCCAGGCGCCTTGCACCAGGGTGTTGACCGTCAACTGTGCCGCCTGGGCGCGCTGCGCCACCTGCGCGCTTTGCTCGCGGGTCAGGTACACCAGCTCATCGGCCACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATCACGCGAAGCCTCACGGTCCCATCGCTGCAGCAAGGCGATGAAGTCGCGGTAGCGCGGCGGCGTCGGCAGTTGTACCGGCACACCGGTGGTC  >  NC_002947/4781938‑4782229                                                                                                                                                 |                                                                                                                                                    cAGTGCCCAGGCGCCTTGCACCAGGGTGTTGACCGTCAACTGTGCCGCCTGGGCGCGCTGCGCCACCTGCGCGCTTTGCTCGCGGGTCAGGTACACCAGCTCATCGGCCACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGaa                                                                                                                                                >  1:211545/1‑150 (MQ=255)  aGTGCCCAGGCGCCTTGCACCAGGGTGTTGACCGTCAACTGTGCCGCCTGGGCGCGCTGCGCCACCTGCGCGCTTTGCTCGCGGGTCAGGTACACCAGCTCATCGGCCACTGCTGCATGGTTGTGCTCGGCGCTGTCGCTGCGGTCGatc                                                                                                                                               <  2:249975/150‑3 (MQ=255)  aGTGCCCAGGCGCCTTGCACCAGGGTGTTGACCGTCAACTGTGCCGCCTGGGCGCGCTGCGCCACCTGCGCGCTTTGCTCGCGGGTCAGGTACACCAGCTCATCGGCCACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAAc                                                                                                                                               <  2:624088/150‑1 (MQ=255)  aGTGCCCAGGCGCCTTGCACCAGGGTGTTGACCGTCAACTGTGCCGCCTGGGCGCGCTGCGCCACCTGCGCGCTTTGCTCGCGGGTCAGGTACACCAGCTCATCGGCCACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAAc                                                                                                                                               <  2:696559/150‑1 (MQ=255)       ccAGGCGCCTTGCACCAGGGTGTTGACCGTCAACTGTGCCGCCTGGGCGCGCTGCGCCACCTGCGCGCTTTGCTCGCGGGTCAGGTACACCAGCTCATCGGCCACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAg                                                                                                                                          >  1:569539/1‑150 (MQ=255)               cTTGCACCAGGGTGTTGACCGTCAACTGTGCCGCCTGGGCGCGCTGCGCCACCTGCGCGCTTTGCTCGCGGGTCAGGTACACCAGCTCATCGGCCACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCg                                                                                                                                  >  2:487873/1‑150 (MQ=255)                   cACCAGGGTGTTGACCGTCAACTGTGCCGCCTGGGCGCGCTGCGCCACCTGCGCGCTTTGCTCGCGGGTCAGGTACACCAGCTCATCGGCCACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGccgaccgcgctgccgttcgaccg                                                                                                                              <  2:806281‑M1/150‑24 (MQ=255)                                 ccGTCAACTGTGCCGCCTGGGCGCGCTGCGCCACCTGCGCGCTTTGCTCGCGGGTCAGGTACACCAGCTCATCGGCCACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTtgca                                                                                                                >  1:713872‑M2/1‑146 (MQ=255)                                    tCAACTGTGCCGCCTGGGCGCGCTGCGCCACCTGCGCGCTTTGCTCGNGGGTCAGGTACACCAGCTCATCGGCCACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGAGGTGGGCCGCTCGAAACCTTGCAGCt                                                                                                             >  1:340281/1‑150 (MQ=255)                                                    ggCGCGCTGCGCCACCTGCGCGCCTTGCTCGCGGGTCAGGTACACCAGCTCATCGGCCACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATc                                                                                             >  2:243255/1‑150 (MQ=255)                                                      cgcgcTGCGCCACCTGCGCGCTTTGCTCGCGGGTCAGGTACACCAGCTCATCGGCCACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATCAc                                                                                           <  1:360467/150‑1 (MQ=255)                                                       gcgcTGCGCCACCTGCGCGCTTTGCTCGCGGGTCAGGTACACCAGCTCATCGGCCACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATCAcg                                                                                          >  2:803581/1‑150 (MQ=255)                                                          cTGCGCCACCTGCGCGCTTTGCTCGCGGGTCAGGTACACCAGCTCATCGGCCACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGaa                                                                                                                                                <  1:589874/93‑1 (MQ=255)                                                          cTGCGCCACCTGCGCGCTTTGCTCGCGGGTCAGGTACACCAGCTCATCGGCCACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGaa                                                                                                                                                >  2:589874/1‑93 (MQ=255)                                                                      cgctcTTTGCTCGCGGGTCAGGTACACCAGCTCATCGGCCACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATCACGCGAAGCCTCACGGTc                                                                           <  2:418524/150‑1 (MQ=255)                                                                                tCGCGGGTCAGGTACACCAGCTCATCGGCCACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGccgaccgcgctgccgttcgacc                                                                                                                               <  1:353100‑M1/88‑23 (MQ=255)                                                                                tCGCGGGTCAGGTACACCAGCTCATCGGCCACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGccgaccgcgctgccgttcgacc                                                                                                                               >  2:353100‑M1/1‑66 (MQ=255)                                                                                tCGCGGGTCAGGTACACCAGCTCATCGGCCACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATCACGCGAAGCCTCACGGTCCCATCGCTgc                                                                 >  2:414264/1‑150 (MQ=255)                                                                                           gTACACCAGCTCATCGGCCACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATCACGCGAAGCCTCACGGTCCCATCGCTGCAGCAAGGCGAt                                                      <  1:243255/150‑1 (MQ=255)                                                                                           gTACACCAGCTCATCGGCCACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATCACGCGAAGCCTCACGGTCCCATCGCTGCAGCAAGGCGAt                                                      <  1:770667/150‑1 (MQ=255)                                                                                               acCAGCTCATCGGCCACTGCTGCACGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATCACGCGAAGCCTCACGGTCCCATCGCTGCAGCAAGGCGATGAAg                                                  >  1:69376/1‑150 (MQ=255)                                                                                                           gCCACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATCACGCGAAGCCTCACGGTCCCATCGCTGCAGCAAGGCGATGAAGTCGCGGTAgcgc                                      >  2:561942/1‑150 (MQ=255)                                                                                                            ccACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATCACGCGAAGCCTCACGGTCCCATCGCTGCAGCAAGGCGATGAAGTCGCGGTAGcgcg                                     >  1:720045/1‑150 (MQ=255)                                                                                                            ccACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATCACGCGAAGCCTCACGGTCCCATCGCTGCAGCAAGGCGATGAAGTCGCGGTAGcgcg                                     >  2:648007/1‑150 (MQ=255)                                                                                                              aCTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTtgcagcagtggccgatgagctggtgtacctgacccgcgagcaaagcgcgcaggtggcgcagcgc                                                    >  2:84303‑M2/1‑69 (MQ=255)                                                                                                              aCTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTtgcagcagtggccgatgagctggtgtacctgacccgcgagcaaagcgcgcaggtggcgcagcgc                                                    <  1:84303‑M2/133‑65 (MQ=255)                                                                                                              aCTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATCACGCGAAGCCTCACGGTCCCATCGCTGCAGCAAGGCGATGAAGTCGCGGTAGCgcggc                                   <  2:720045/150‑1 (MQ=255)                                                                                                                 gctgcATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATCACGCGAAGCCTCACGGTCCCATCGCTGCAGCAAGGCGATGAAGTCGCGGTAGCgcggcggc                                <  1:579689/150‑1 (MQ=255)                                                                                                                   tgcATGGTTGTGCTCGGCGCTGGCGCTGCGGccgaccgcgctgccgttcga                                                                                                                                 >  2:46996‑M1/1‑31 (MQ=255)                                                                                                                   tgcATGGTTGTGCTCGGCGCTGGCGCTGCGGccgaccgcgctgccgttcga                                                                                                                                 <  1:46996‑M1/51‑21 (MQ=255)                                                                                                                   tgcATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTtgcagcagtggccgatgagctggtgtacctgacccgcgagcaaagcgcgca                                                                 >  2:477994‑M2/1‑64 (MQ=255)                                                                                                                   tgcATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTtgcagcagtggccgatgagctggtgtacctgacccgcgagcaaagcgcgca                                                                 <  1:477994‑M2/115‑52 (MQ=255)                                                                                                                   tgcATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATCACGCGAAGCCTCACGGTCCCATCGCTGCAGCAAGGCGATGAAGTCGCGGTAGCGCGGCGGCGt                              >  1:776420/1‑150 (MQ=255)                                                                                                                    gcATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATCACGCGAAGCCTCACGGTCCCATCGCTGCAGCAAGGCGATGAAGTCGCGGTAGCGCGGCGGCGTc                             <  1:803581/150‑1 (MQ=255)                                                                                                                            gtgCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATCACGCGAAGCCTCACGGTCCCATCGCTGCAGCAAGGCGATGAAGTCGCGGTAGCGCGGCGGCGTCGGCAGTTg                     >  1:349448/1‑150 (MQ=255)                                                                                                                                  ggcgctggcgctGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATCACGCGAAGCCTCACGGTCCCATCGCTGCAGCAAGGCGATGAAGTCGCGGTAGCGCGGCGGCGTCGGCAGTTGTACCgg               <  1:81546/150‑1 (MQ=255)                                                                                                                                  ggcgctggcgctGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATCACGCGAAGCCTCACGGTCCCATCGCTGCAGCAAGGCGATGAAGTCGCGGTAGCGCGGCGGCGTCGGCAGTTGTACCgg               <  1:648007/150‑1 (MQ=255)                                                                                                                                           gctgCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATCACGCGAAGCCTCACGGTCCCATCGCTGCAGCAAGGCGATGAAGTCGCGGTAGCGCGGCGGCGTCGGCAGTTGTACCGGCACACCggt      <  2:622406/150‑1 (MQ=255)                                                                                                                                           gctgCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATCACGCGAAGCCTCACGGTCCCATCGCTGCAGCAAGGCGATGAAGTCGCGGTAGCGCGGCGGCGTCGGCAGTTGTACCGGCACACCggt      >  1:622406/1‑150 (MQ=255)                                                                                                                                             tgCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATCACGCGAAGCCTCACGGTCCCATCGCTGCAGCAAGGCGATGAAGTCGCGCGAACGCGGCGGCGTCGGCAGTTGTACCGGCACACCggtgg    >  1:684626/1‑150 (MQ=255)                                                                                                                                               cGGTCGAACGGCAGCGCGGTCGGccgcagcgccagcgccgagcacaaccatgcagcagtggccgatgagctggtgtacctgacccgcgagcaaagcgcgcaggtggcgcagcgcgcccaggcggcacagttgacggtcaacaccctggtg  <  2:806281‑M2/150‑128 (MQ=255)                                                                                                                                               cGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATCACGCGAAGCCTCACGGTCCCATCGCTGCAGCAAGGCGATGAAGTCGCGGTAGCGCGGCGGCGTCGGCAGTTGTACCGGCACACCGGTGGTc  <  2:798172/150‑1 (MQ=255)                                                                                                                                                ggTCGAACGGCAGCGCGGTCGGccgcagcgccagcgccgagcacaaccatgcagcagtggccgatgagctggtgtacctgacccgcga                                                               <  1:353100‑M2/88‑67 (MQ=255)                                                                                                                                                ggTCGAACGGCAGCGCGGTCGGccgcagcgccagcgccgagcacaaccatgcagcagtggccgatgagctggtgtacctgacccgcga                                                               >  2:353100‑M2/1‑22 (MQ=255)                                                                                                                                                 |                                                                                                                                                    CAGTGCCCAGGCGCCTTGCACCAGGGTGTTGACCGTCAACTGTGCCGCCTGGGCGCGCTGCGCCACCTGCGCGCTTTGCTCGCGGGTCAGGTACACCAGCTCATCGGCCACTGCTGCATGGTTGTGCTCGGCGCTGGCGCTGCGGTCGAACGGCAGCGCGGTCGGCCGCTCGAAACCTTGCAGCTCATTGCGCCAGAAATCACGCGAAGCCTCACGGTCCCATCGCTGCAGCAAGGCGATGAAGTCGCGGTAGCGCGGCGGCGTCGGCAGTTGTACCGGCACACCGGTGGTC  >  NC_002947/4781938‑4782229

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.