New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5585727 =	33 (1.040)	5 (0.170)	4/236	NT	13.8%	coding (56/2259 nt)	parC	DNA topoisomerase IV subunit A
	?	NC_002947	5585764 =	31 (1.030)					coding (19/2259 nt)	parC	DNA topoisomerase IV subunit A

TCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAGGGCACTCATGC  >  NC_002947/5585578‑5585869                                                                                                                                                      |                                                                                                                                               tcttGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGt                                                                                                                                                <  2:118515/150‑1 (MQ=255)    atcgtggtgccgggcctggatgggtccaccgtactgctgggcatgagtgccctgcaacaacttgaatttacccagcgcggtggcaccatgctgctgcgccagaacctgaaataatgacgaggcccgcatgagcgactcactggaacTcag                                                                                                                                             <  2:574550‑M1/4‑1 (MQ=255)             catcggcatcgAGCCCCAACTCGCTCCGCACCTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCagcgagc                                                                                                                                    >  1:239744/1‑150 (MQ=255)                   ctggatgggtccaccgtactgctgggcatgagtgccctgcaacaacttgaatttacccagcgcggtggcaccatgctgctgcgccagaacctgaaataatgacgaggcccgcatgagcgactcactggaacTCAGCCAGCGAGCGGCGtt                                                                                                                              <  1:66863‑M1/19‑1 (MQ=255)                         gCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCagcgagcg                                                                                                                                   <  2:559574/139‑1 (MQ=255)                         gCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCagcgagcg                                                                                                                                   >  1:559574/1‑139 (MQ=255)                             cAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTc                                                                                                                    >  1:801757/1‑150 (MQ=255)                             cAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTc                                                                                                                    >  1:533019/1‑150 (MQ=255)                                 tCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAgg                                                                                                                <  2:168923/150‑1 (MQ=255)                                  cGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGc                                                                                                               <  1:353450/150‑1 (MQ=255)                                     tCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGa                                                                                                            <  2:187588/150‑1 (MQ=255)                                     ctgctgggcatgagtgccctgcaacaacttgaatttacccagcgcggtggcaccatgctgctgcgccagaacctgaaataatgacgaggcccgcatgagcgactcactggaacTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGa                                                                                                            >  2:479299‑M1/114‑150 (MQ=255)                                        tGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGtt                                                                                                         >  1:77879/1‑150 (MQ=255)                                         ggCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTc                                                                                                        <  1:373565/150‑1 (MQ=255)                                           ggcatgagtgccctgcaacaacttgaatttacccagcgcggtggcaccatgctgctgcgccagaacctgaaataatgacgaggcccgcatgagcgactcactggaacTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCa                                                                                                      >  2:66863‑M1/108‑150 (MQ=255)                                             tAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGt                                                                                                    <  2:801757/150‑1 (MQ=255)                                               gACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGa                                                                                                  <  2:77879/150‑1 (MQ=255)                                                aCGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAg                                                                                                 <  1:125834/150‑1 (MQ=255)                                                       gTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCa                                                                                          >  1:358744/1‑150 (MQ=255)                                                            tGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAGGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCgg                                                                                     <  1:469750/150‑1 (MQ=255)                                                            acaacttgaatttacccagcgcggtggcaccatgctgctgcgccagaacctgaaataatgacgaggcccgcatgagcgactcactggaacTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGa                                                                                                            <  2:410344‑M1/37‑1 (MQ=255)                                                            acaacttgaatttacccagcgcggtggcaccatgctgctgcgccagaacctgaaataatgacgaggcccgcatgagcgactcactggaacTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGa                                                                                                            >  1:410344‑M1/91‑127 (MQ=255)                                                                                                   cGATCCATGATCACGTACATGGAGTAGGTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGt                                              <  2:198877/150‑1 (MQ=255)                                                                                                      tCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCgca                                                        >  1:374127/1‑137 (MQ=255)                                                                                                      tCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCgca                                                        <  2:374127/137‑1 (MQ=255)                                                                                                       ccATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTc                                                                             >  2:63533/1‑115 (MQ=255)                                                                                                       ccATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTc                                                                             <  1:63533/115‑1 (MQ=255)                                                                                                        cATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGt                                                                                                    >  1:801281/1‑91 (MQ=255)                                                                                                        cATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGt                                                                                                    <  2:801281/91‑1 (MQ=255)                                                                                                          tGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACcg                                       >  1:783503/1‑150 (MQ=255)                                                                                                             tCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATg                                                >  2:553929/1‑138 (MQ=255)                                                                                                             tCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATg                                                <  1:553929/138‑1 (MQ=255)                                                                                                               aCGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGc                                                                                   <  2:201261/101‑1 (MQ=255)                                                                                                               aCGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGc                                                                                   >  1:201261/1‑101 (MQ=255)                                                                                                               aCGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTg                                  >  1:367094/1‑150 (MQ=255)                                                                                                                aaataatgacgaggcccgcatgagcgactcactggaact                                                                                                                                                >  1:455176‑M1/39‑39 (MQ=255)                                                                                                                aaataatgacgaggcccgcatgagcgactcactggaact                                                                                                                                                <  2:455176‑M1/1‑1 (MQ=255)                                                                                                                     aTGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTaaa                            >  2:127900/1‑150 (MQ=255)                                                                                                                          gtagtTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCaa                       >  1:523926/1‑150 (MQ=255)                                                                                                                                gAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCCAgttgtt                 <  2:358744/150‑1 (MQ=255)                                                                                                                                     aGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGACCTACAGCACGACCGGCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAgg            <  2:239744/150‑1 (MQ=255)                                                                                                                                               ggTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAGGGCACTCATGc  >  1:705481/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                               TCTTGTGCTTGGCATCGGCATCGAGCCCCAACTCGCTCATGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAGGGCACTCATGC  >  NC_002947/5585578‑5585869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.