New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5585727 =	33 (1.040)	5 (0.170)	4/236	NT	13.8%	coding (56/2259 nt)	parC	DNA topoisomerase IV subunit A
	?	NC_002947	5585764 =	31 (1.030)					coding (19/2259 nt)	parC	DNA topoisomerase IV subunit A

TGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAGGGCACTCATGCCCAGCAGTACGGTGGACCCATCCAGGCCCGGCACCACGAT  >  NC_002947/5585617‑5585909                                                                                                                                                    |                                                                                                                                                  tGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGtt                                                                                                                                                 >  1:77879/1‑150 (MQ=255)  ggCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTc                                                                                                                                                <  1:373565/150‑1 (MQ=255)    ggcatgagtgccctgcaacaacttgaatttacccagcgcggtggcaccatgctgctgcgccagaacctgaaataatgacgaggcccgcatgagcgactcactggaacTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCa                                                                                                                                              >  2:66863‑M1/108‑150 (MQ=255)      tAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGt                                                                                                                                            <  2:801757/150‑1 (MQ=255)        gACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGa                                                                                                                                          <  2:77879/150‑1 (MQ=255)         aCGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAg                                                                                                                                         <  1:125834/150‑1 (MQ=255)                gTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCa                                                                                                                                  >  1:358744/1‑150 (MQ=255)                     tGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAGGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCgg                                                                                                                             <  1:469750/150‑1 (MQ=255)                                                            cGATCCATGATCACGTACATGGAGTAGGTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGt                                                                                      <  2:198877/150‑1 (MQ=255)                                                               tCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCgca                                                                                                >  1:374127/1‑137 (MQ=255)                                                               tCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCgca                                                                                                <  2:374127/137‑1 (MQ=255)                                                                ccATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTc                                                                                                                     >  2:63533/1‑115 (MQ=255)                                                                ccATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTc                                                                                                                     <  1:63533/115‑1 (MQ=255)                                                                 cATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGt                                                                                                                                            <  2:801281/91‑1 (MQ=255)                                                                 cATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGt                                                                                                                                            >  1:801281/1‑91 (MQ=255)                                                                   tGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACcg                                                                               >  1:783503/1‑150 (MQ=255)                                                                      tCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATg                                                                                        <  1:553929/138‑1 (MQ=255)                                                                      tCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATg                                                                                        >  2:553929/1‑138 (MQ=255)                                                                        aCGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGc                                                                                                                           <  2:201261/101‑1 (MQ=255)                                                                        aCGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGc                                                                                                                           >  1:201261/1‑101 (MQ=255)                                                                        aCGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTg                                                                          >  1:367094/1‑150 (MQ=255)                                                                              aTGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTaaa                                                                    >  2:127900/1‑150 (MQ=255)                                                                                   gtagtTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCaa                                                               >  1:523926/1‑150 (MQ=255)                                                                                         gAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCCAgttgtt                                                         <  2:358744/150‑1 (MQ=255)                                                                                              aGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGACCTACAGCACGACCGGCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAgg                                                    <  2:239744/150‑1 (MQ=255)                                                                                                        ggTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAGGGCACTCATGc                                          >  1:705481/1‑150 (MQ=255)                                                                                                         tggaactcagcctggacggcgtcgaacgccgctcgctggctgaGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAGGGCACTCATGcc                                         >  2:66863‑M2/44‑150 (MQ=255)                                                                                                               tcagcctggacggcgtcgaacgccgctcgctggctgaGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCAAgttgt                                                          >  1:410344‑M2/38‑127 (MQ=255)                                                                                                               tcagcctggacggcgtcgaacgccgctcgctggctgaGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCAAgttgt                                                          <  2:410344‑M2/90‑1 (MQ=255)                                                                                                               tcagcctggacggcgtcgaacgccgctcgctggctgaGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAGGGCACTCATGCCcagcag                                   >  2:479299‑M2/38‑150 (MQ=255)                                                                                                                 agccagcGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTAGAGTAAGTGGACACCAGCATGGTGCCACCGCGCTGGCTCAATTCTAGTGCTTGCAGGGCACTCATGCCCAGCAGTa                                 >  1:574550/1‑150 (MQ=255)                                                                                                                 AGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAGGGCACTCATGCCCAGCAGTa                                 >  2:367094‑M1/1‑150 (MQ=255)                                                                                                                      gcgagcgGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAGGGCACTCATGCCcagca                                    <  1:618167/142‑1 (MQ=255)                                                                                                                      gcgagcgGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAGGGCACTCATGCCcagca                                    >  2:618167/1‑142 (MQ=255)                                                                                                                               gTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAGGGCACTCATGCCCAGCAGTACGGTGGACCCATcc                   <  1:127900/150‑1 (MQ=255)                                                                                                                                 aacgccgctcgctggctgaGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAGGGCACTCATGCCCAGCAGTACGGTGGACCCATCCAg                 <  1:66863‑M2/131‑1 (MQ=255)                                                                                                                                  cGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAGGGCACTCATGCCCAGCAGTACGGTGGACCCATCCAgg                <  2:533019/150‑1 (MQ=255)                                                                                                                                    aCGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAGGGCACTCATGccc                                        >  2:647004/1‑124 (MQ=255)                                                                                                                                    aCGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAGGGCACTCATGccc                                        <  1:647004/124‑1 (MQ=255)                                                                                                                                    aCGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGACATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTATATTCAAGTTGTTGCAGGGCACTCATGCCCAGCAGTACGGTGGACCCATCCAGGcc              >  2:334534/1‑150 (MQ=255)                                                                                                                                                ctgaGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAGGGCACTCATGCCCAGCAGTACGGTGGACCCATCCAGGCCCGGCACCACGAt  <  2:574550‑M2/146‑1 (MQ=255)                                                                                                                                                   aGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTAttt                                                                                                              <  2:455176‑M2/38‑1 (MQ=255)                                                                                                                                                   aGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTAttt                                                                                                              >  1:455176‑M2/2‑39 (MQ=255)                                                                                                                                                    |                                                                                                                                                  TGGCGTAGACGATGCGTCGCTGCACCGGCTTCAGGCCGTCGCCGATATGCGGCAAGGCACGATCCATGATCACGTACATGGAGTAGTTGAGGTAGGCCTGTTCGGTGAAGTCAGCCAGCGAGCGGCGTTCGACGCCGTCCAGGCTGAGTTCCAGTGAGTCGCTCATGCGGGCCTCGTCATTATTTCAGGTTCTGGCGCAGCAGCATGGTGCCACCGCGCTGGGTAAATTCAAGTTGTTGCAGGGCACTCATGCCCAGCAGTACGGTGGACCCATCCAGGCCCGGCACCACGAT  >  NC_002947/5585617‑5585909

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.