New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5696404	26 (0.820)	3 (0.100)	3/238	NT	9.7%	coding (1072/1272 nt)	pyrC'	dihydroorotase‑like protein
	?	NC_002947	= 5696426	31 (1.020)					coding (1094/1272 nt)	pyrC'	dihydroorotase‑like protein

AGCCGCACGAGCGCGACGCCAAGCTGGCCCCGTTCGGCGCCACCGAGCCGGGTATCAGCAGCGTCGAGTTGCTGCTGCCACTGGCCATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCA  >  NC_002947/5696255‑5696536                                                                                                                                                       |                                                                                                                                     aGCCGCACGAGCGCGACGCCAAGCTGGCCCCGTTCGGCGCCACCGAGCCGGGTATCAGCAGCGTCGAGTTGCTGCTGCCACTGGCCATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CC                                                                                                                                      >  1:722480‑M1/1‑150 (MQ=255)               gACGCCAAGCTGGCCCCGTTCGGCGCCACCGAGCCGGGTATCAGCAGCGTCGAGTTGCTGCTGCCACTGGCCATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTg                                                                                                                        >  2:750136/1‑150 (MQ=255)                              ccGTTCGGCGCCACCGAGCCGGGTATCAGCAGCGTCGAGTTGCTGCTGCCACTGGCCATGACCCTGGTGCAGGACGGCCTGCTCGCCCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGt                                                                                                         <  2:722480/150‑1 (MQ=255)                                       gcCACCGAGCCGGGTATCAGCAGCGTCGAGTTGCTGCTGCCACTGGCCATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGaaa                                                                                                <  1:30262/150‑1 (MQ=255)                                        ccACCGAGCCGGGTATCAGCAGCGTCGAGTTGCTGCTGCCACTGGCCATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CC‑GGCAGGCGCAGGGCGGCAGCCgggccgctgctcaggcgg                                                                                              >  1:448759‑M2/1‑132 (MQ=255)                                          aCCGAGCCGGGTATCAGCAGCGTCGAGTTGCTGCTGCCACTGGCCATGACCCTGGTGCATGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAgtg                                                                                             >  1:6393/1‑150 (MQ=255)                                          aCCGAGCCGGGTATCAGCAGCGTCGAGTTGCTGCTGCCACTGGCCATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAgtg                                                                                             >  2:318523/1‑150 (MQ=255)                                             gAGCCGGGTATCAGCAGCGTCGCGTTGCTGCTGCCACTGGCCATGACCCTGGTGCACGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTAAGCAGGGT‑CCCGGCTTCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAgtgggt                                                                                          <  1:657398/150‑1 (MQ=255)                                                        cagcagCGTCGAGTTGCTGCTGCCACTGGCCATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCCGGGGTGCCGGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGa                                                                               >  1:743480/1‑150 (MQ=255)                                                          gcagcGTCGAGTTGCTGCTGCCACTGGCCATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGAcc                                                                             <  2:453546/150‑1 (MQ=255)                                                                           ctgcCACTGGCCATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCg                                                            >  1:757894/1‑150 (MQ=255)                                                                              ccACTGGCCATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCaa                                                         <  1:66563/150‑1 (MQ=255)                                                                                      cATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGCCCTAGCTGGCCCGCCTGAGCCGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGCCCTGGTGCTGTTCGACCCGCCAGCGTcctg                                                 >  2:308613/1‑148 (MQ=255)                                                                                      cATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCAc                                                 >  2:462575/1‑150 (MQ=255)                                                                                          aCCCTGGTGCATGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGtt                                             <  2:6393/150‑1 (MQ=255)                                                                                           cccTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTg                                            >  2:536538/1‑150 (MQ=255)                                                                                           cccTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTg                                            >  2:752272/1‑150 (MQ=255)                                                                                                gTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGa                                                                                                  <  1:595967/91‑1 (MQ=255)                                                                                                gTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGa                                                                                                  >  2:595967/1‑91 (MQ=255)                                                                                                       aCGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCggcaggcgcagggcggcagccgggc                                                                                                             >  2:155453‑M1/1‑48 (MQ=255)                                                                                                       aCGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCggcaggcgcagggcggcagccgggc                                                                                                             <  1:155453‑M1/73‑26 (MQ=255)                                                                                                        cGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATg                               <  1:318523/150‑1 (MQ=255)                                                                                                           ccTTCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGtt                            >  1:248104/1‑150 (MQ=255)                                                                                                                  gACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTtctcgcca                     >  1:404218/1‑146 (MQ=255)                                                                                                                   aCCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTcc                        >  2:447595/1‑146 (MQ=255)                                                                                                                   aCCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTcc                        <  1:447595/146‑1 (MQ=255)                                                                                                                     cTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCAGTGAg                                                                                                      <  1:660643/66‑1 (MQ=255)                                                                                                                     cTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCAGTGAg                                                                                                      >  2:660643/1‑66 (MQ=255)                                                                                                                          gACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCAACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGaa             >  1:503413/1‑150 (MQ=255)                                                                                                                                    gCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTc   >  1:434702/1‑150 (MQ=255)                                                                                                                                      ccGCCTGAGCAGCGGCCCggctgccgccctgcgcctgccggccgctgctcaggcgggccagcaaggtcggcaggtcgagcaggccgtcctgcaccagggtcatggccagtggcagcagcaactcgacgctgctgatacccggctcggtgg  >  1:448759‑M1/1‑18 (MQ=255)                                                                                                                                                    g‑CCCGGCTGCCGCCCTGCGCCTGCCggccgctgctcaggcgggccagcaaggtcggcaggtcgagcaggccgt                                                                >  2:155453‑M2/1‑25 (MQ=255)                                                                                                                                                    g‑CCCGGCTGCCGCCCTGCGCCTGCCggccgctgctcaggcgggccagcaaggtcggcaggtcgagcaggccgt                                                                <  1:155453‑M2/73‑49 (MQ=255)                                                                                                                                                       |                                                                                                                                     AGCCGCACGAGCGCGACGCCAAGCTGGCCCCGTTCGGCGCCACCGAGCCGGGTATCAGCAGCGTCGAGTTGCTGCTGCCACTGGCCATGACCCTGGTGCAGGACGGCCTGCTCGACCTGCCGACCTTGCTGGCCCGCCTGAGCAGCGG‑CCCGGCTGCCGCCCTGCGCCTGCCGGCCGGTGAGCTGAAAGTGGGTGGCGCGGCCGACCTGGTGCTGTTCGACCCGCAAGCGTCCACCGTTGCTGGCGAACAATGGTTCTCCCGTGGCGAGAACTGCCCGTTCA  >  NC_002947/5696255‑5696536

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.