New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1256601 =	28 (0.880)	4 (0.130)	4/240	NT	12.9%	coding (937/1095 nt)	mrp	ATP‑dependent Fe‑S cluster transferase
	?	NC_002947	1256631 =	27 (0.880)					coding (967/1095 nt)	mrp	ATP‑dependent Fe‑S cluster transferase

ATATCTGCTCGAATTGCGGCCATGCCGAACACCTGTTCGGTGAGGGTGGCGGCGAGAAGCTGGCCAGCCAGTATGGCGTCGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGAGCCGGAAAGCCAGATTGCCATGGTTTACCAGGAGCTGGCCCGCCAGGTAGGCGCGCGGATCGTGCTGCAGGAAGCTGCGGCGCCGGCAATGCCCAGCATTACCATCAGCGAAGACTGACCTGCCATACCGA  >  NC_002947/1256485‑1256772                                                                                                                                                   |                                                                                                                                              atatCTGCTCGAATTGCGGCCATGCCGAACACCTGTTCGGTGAGGGTGGCGGCGAGAAGCTGGCCAGCCAGTATGGCGTCGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGa                                                                                                                                            >  1:476308/1‑150 (MQ=255)            gggcattgccggcgccgcagcttcctgcagcacgatccgcgcgcctacctggcgggccagctcctggtaaaccatggcaatctggctttccggctcggcgatcgcCGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATc                                                                                                                                          >  2:800091‑M1/106‑141 (MQ=255)            gggcattgccggcgccgcagcttcctgcagcacgatccgcgcgcctacctggcgggccagctcctggtaaaccatggcaatctggctttccggctcggcgatcgcCGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATc                                                                                                                                          <  1:800091‑M1/36‑1 (MQ=255)                gCGGCCATGCCGAACACCTGTTCGGTGAGGGTGGCGGCGAGAAGCTGGCCAGCCAGTATGGCGTCGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGAGCCGGaaa                                                                                                                             <  2:414573/150‑1 (MQ=255)                  ggCCATGCCGAACACCTGTTCGGTGAGGGTGGCGGCGAGAAGCTGGCCAGCCAGTATGGCGTCGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGAGCCGGAAAGc                                                                                                                           <  2:65172/150‑1 (MQ=255)                    ccATGCCGAACACCTGTTCGGTGAGGGTGGCGGCGAGAAGCTGGCCAGCCAGTATGGCGTCGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGAGCCGGaaa                                                                                                                             <  2:466387/146‑1 (MQ=255)                    ccATGCCGAACACCTGTTCGGTGAGGGTGGCGGCGAGAAGCTGGCCAGCCAGTATGGCGTCGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGAGCCGGaaa                                                                                                                             >  1:466387/1‑146 (MQ=255)                       caccGAACAGGTGTTCGGTGAGGGTGGCGGCGAGAAGCTGGCCAGCCAGTATGGCGTCGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGAGCCGGAAAGCCAGAt                                                                                                                      >  1:638179/3‑150 (MQ=255)                        gCCGAACACCTGTTCGGTGAGGGTGGCGGCGAGAAGCTGGCCAGCCAGTATGGCGTCGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGACGCAGGCCCACGGCGATCGCCGAGCCGGAAAGCCAGAtt                                                                                                                     >  1:261993/1‑150 (MQ=255)                         ccGAACACCTGTTCGGTGAGGGTGGCGGCGAGAAGCTGGCCAGCCAGTATGGCGTCGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGAGCCGGAAAGCCAGATTg                                                                                                                    >  2:39782/1‑150 (MQ=255)                               acCTGTTCGGTGAGGGTGGCGGCGAGAAGCTGGCCAGCCAGTATGGCGTCGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGa                                                                                                                                     <  1:193874/127‑1 (MQ=255)                               acCTGTTCGGTGAGGGTGGCGGCGAGAAGCTGGCCAGCCAGTATGGCGTCGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGa                                                                                                                                     >  2:193918/1‑127 (MQ=255)                               acCTGTTCGGTGAGGGTGGCGGCGAGAAGCTGGCCAGCCAGTATGGCGTCGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGa                                                                                                                                     >  2:193874/1‑127 (MQ=255)                               acCTGTTCGGTGAGGGTGGCGGCGAGAAGCTGGCCAGCCAGTATGGCGTCGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGa                                                                                                                                     <  1:193918/127‑1 (MQ=255)                               acCTGTTCGGTGAGGGTGGCGGCGAGAAGCTGGCCAGCCAGTATGGCGTCGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGAGCCGGAAAGCCAGATTGCCa                                                                                                                 <  1:720173/147‑1 (MQ=255)                               acCTGTTCGGTGAGGGTGGCGGCGAGAAGCTGGCCAGCCAGTATGGCGTCGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGAGCCGGAAAGCCAGATTGCCa                                                                                                                 >  2:720173/1‑147 (MQ=255)                                 cTGTTCGGTGAGGGTGGCGGCGAGAAGCTGGCCAGCCAGTATGGCGTCGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGAGCCGGAAAGCCAGATTGCCATGGtt                                                                                                            >  1:698257/1‑150 (MQ=255)                                       ggTGAGGGTGGCGGCGAGAAGCTGGCCAGCCAGTATGGCGTCGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGAGCCGGAAAGCCAGATTGCCATGGTTTACCAg                                                                                                      <  2:698257/150‑1 (MQ=255)                                        gTGAGGGTGGCGGCGAGAAGCTGGCCAGCCAGTATGGTGTCGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGTGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGAGCCGGAAAGCCAGATTGCCATGGTTTACCAgg                                                                                                     <  2:376297/150‑1 (MQ=255)                                         tGAGCGTGGTTGCGATAAGCTGGCCAGCCAGTATGGCGTCGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGAGCCGGAAAGCCAGATTGCCATGGTTTACCAGGa                                                                                                    <  2:476308/150‑1 (MQ=255)                                             ggTGGCGGCGAGAAGCTGGCCAGCCAGTATGGCGTCGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGAGCCGGAAAGCCAGATTGCCATGGTTTACCAGGAGCTg                                                                                                <  1:640150/150‑1 (MQ=255)                                                   ggcgAGAAGCTGGCCAGCCAGTATGGCGTCGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGAGCCGGAAAGCCAGATTGCCATGGTTTACCAGGAGCTGGCCCGc                                                                                          <  1:353600/150‑1 (MQ=255)                                                                             cGTCGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGAGCCGGAAAGCCAGATTGCCATGGTTTACCAGGAGCTGGCCCGCCAGGTAGGCGCGCGGATCGTGCTGCa                                                                <  2:255455/150‑1 (MQ=255)                                                                                cGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGAGCCGGAAAGCCAGATTGCCATGGTTTACCAGGAGCTGGCCCGCCAGGTAGGCGCGCGGATCGTGCTGCAGGa                                                             <  1:171439/150‑1 (MQ=255)                                                                                 gACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGAGCCGGAAAGCCAGATTGCCATGGTTTACCAGGAGCTGGCCCGCCAGGTAGGCGCGCGGATCGTGCTGCAGGaa                                                            <  1:39782/150‑1 (MQ=255)                                                                                                   ccGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGAGCCGGAAAGCCAGATTGCCATGGTTTACCAGGAGCTGGCCCGCCAGGTAGGCGCGCGGATCGTGCTGCAGGAAGCTGCGGCGCCGGCAATg                                          >  2:23880/1‑150 (MQ=255)                                                                                                               gatcgccgtgggcttgccgctgtcggcctgctcacgGCGATCGCCGAGCCGGAAAGCCAGATTGCCATGGTTTACCAGGAGCTGGCCCGCCAGGTAGGCGCGCGGATCGTGCTGCAGGAAGCTGCGGCGCCGGCAATGccc                                       <  1:800091‑M2/105‑1 (MQ=255)                                                                                                               gatcgccgtgggcttgccgctgtcggcctgctcacgGCGATCGCCGAGCCGGAAAGCCAGATTGCCATGGTTTACCAGGAGCTGGCCCGCCAGGTAGGCGCGCGGATCGTGCTGCAGGAAGCTGCGGCGCCGGCAATGccc                                       >  2:800091‑M2/37‑141 (MQ=255)                                                                                                                tGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGAGCCGGAAAGCCAGATTGCCATGGTTTACCAGGAGCTGGCCCGCCAGGTAGGCGCGCGGATCGTGCTGCAGGAAGCTGCGGCGCCGGCAATGCCCAGCATTACCa                             >  1:546055/1‑150 (MQ=255)                                                                                                                tGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGAGCCGGAAAGCCAGATTGCCATGGTTTACCAGGAGCTGGCCCGCCAGGTAGGCGCGCGGATCGTGCTGCAGGAAGCTGCGGCGCCGGCAATGCCCAGCATTACCa                             >  1:467110/1‑150 (MQ=255)                                                                                                                      gtgggcttgccgctgtcggcctgctcacgGCGATCGCCGAGCCGGAAAGCCAGATTGCCATGGTTTACCAGGAGCTGGccc                                                                                            <  2:179739‑M2/52‑1 (MQ=255)                                                                                                                      gtgggcttgccgctgtcggcctgctcacgGCGATCGCCGAGCCGGAAAGCCAGATTGCCATGGTTTACCAGGAGCTGGccc                                                                                            >  1:179739‑M2/30‑81 (MQ=255)                                                                                                                               ccGACAGCGGCAAGCCCACGGCGATCGCCGAGCCGGAAAGCCAGATTGCCATGGTTTACCAGGAGCTGGCCCGCCAGGTAGGCGCGCGGATCGTGCTGCAGGAAGCTGCGGCGCCGGCAATGCCCAGCATTACCATCAGCGAAGACTGAc              >  1:387767/1‑150 (MQ=255)                                                                                                                                       ggCAAGCCCACGGCGATCGCCGAGCCGGAAAGCCAGATTGCCATGGTTTACCAGGAGCTGGCCCGCCAGGTAGGCGCGCGGATCGTGCTGCAGGAAGCTGCGGCGCCGGCAATGCCCAGCCTTACCATCAGCGAAGACTGACCTGCCATa      >  1:141350/1‑150 (MQ=255)                                                                                                                                          aaGCCCACGGCGATCGCCGAGCCGGAAAGCCAGATTGCCATGGTTTACCAGGAGCTGGCCCGCCAGGTAGGCGCGCGGATCGTGCTGCAGGAAGCTGCGGCGCCGGCAATGCCCAGCATTACCATCAGCGAAGACTGACCTGCCATAcc    >  1:66608/1‑149 (MQ=255)                                                                                                                                          aaGCCCACGGCGATCGCCGAGCCGGAAAGCCAGATTGCCATGGTTTACCAGGAGCTGGCCCGCCAGGTAGGCGCGCGGATCGTGCTGCAGGAAGCTGCGGCGCCGGCAATGCCCAGCATTACCATCAGCGAAGACTGACCTGCCATAcc    <  2:66608/149‑1 (MQ=255)                                                                                                                                           accccACGTCGATCGCCGAGCCGGAAAGCCCGTTTGCCATGGTTTACCAGGAGCTGGCCCGCCAGGTAGGCGCGCGGATCGTGCTGCAGGAAGCTGCGGCGCCGGCAATGCCCAGCATTACCATCAGCGAAGACTGACCTGCCATACCGa  <  2:141350/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                              ATATCTGCTCGAATTGCGGCCATGCCGAACACCTGTTCGGTGAGGGTGGCGGCGAGAAGCTGGCCAGCCAGTATGGCGTCGACCTGCTGGCGTCGCTGCCGTTGTCGATGCTGATACGTGAGCAGGCCGACAGCGGCAAGCCCACGGCGATCGCCGAGCCGGAAAGCCAGATTGCCATGGTTTACCAGGAGCTGGCCCGCCAGGTAGGCGCGCGGATCGTGCTGCAGGAAGCTGCGGCGCCGGCAATGCCCAGCATTACCATCAGCGAAGACTGACCTGCCATACCGA  >  NC_002947/1256485‑1256772

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.