New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1949563 =	29 (0.920)	3 (0.100)	5/232	NT	10.1%	coding (135/1746 nt)	PP_1749	acetyltransferase
	?	NC_002947	1949591 =	26 (0.880)					coding (107/1746 nt)	PP_1749	acetyltransferase

CAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGATTCCTTGTTCGCTCAGCCACAGGTTCA  >  NC_002947/1949443‑1949732                                                                                                                                                       |                                                                                                                                              cAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTc                                                                                                                                              >  2:546642/1‑150 (MQ=255)       ctgctgCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGtgg                                                                                                                                        >  2:593841/1‑150 (MQ=255)            gcggtgcggCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTggc                                                                                                                                   >  2:652744‑M2/1‑147 (MQ=255)               gtgcggCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGc                                                                                                                                >  2:632873/1‑150 (MQ=255)                    gCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCg                                                                                                                           >  1:342131/1‑150 (MQ=255)                      cACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGcc                                                                                                                         >  2:289424/1‑150 (MQ=255)                           aCAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCa                                                                                                                    >  2:198073/1‑150 (MQ=255)                                        gcgTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAg                                                                                                       <  1:198073/150‑1 (MQ=255)                                        gcgTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAg                                                                                                       >  1:425612/1‑150 (MQ=255)                                               cccGGGTGGTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCg                                                                                                <  1:511632/150‑1 (MQ=255)                                                ccGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGt                                                                                               >  1:785803/1‑150 (MQ=255)                                                 cGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTa                                                                                              <  2:215908/150‑1 (MQ=255)                                                     tGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGAc                                                                                          <  1:243846/150‑1 (MQ=255)                                                        tcgtcgAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGGTGCTGTCGCCGGCCAGGGGCGGCTGCAGGCGGACGAAGGGCggg                                                                                       >  2:326619/1‑149 (MQ=255)                                                           tcgAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGcc                                                                                    >  2:793350/1‑150 (MQ=255)                                                             gAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCATCAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTTCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTg                                                                                  >  2:756624/1‑150 (MQ=255)                                                             gAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCGGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGTCGGCGccgg                                                                                  >  1:464045/1‑148 (MQ=255)                                                                gcgccgtcctacgagcgcctgcaggcgcgcctggccggcgacggcagccagccacacgaccagccgcagtgcacggcacgcggctggTCgtg                                                                                                                                           <  2:183408‑M2/5‑1 (MQ=255)                                                                gcgccgtcctacgagcgcctgcaggcgcgcctggccggcgacggcagccagccacacgaccagccgcagtgcacggcacgcggctggTCgtg                                                                                                                                           >  1:183408‑M2/88‑92 (MQ=255)                                                                 aGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTTTGGCCTATCAACAGCCGAACCAAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCcg                                                                              >  1:367251/1‑150 (MQ=255)                                                                   aTCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCcgcg                                                                            >  2:800006/1‑150 (MQ=255)                                                                         ggCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGTCGCGcagcag                                                                      <  2:425612/150‑1 (MQ=255)                                                                           ccAGGGAAGCCGGGTGGGGGTGGGTGTGGCGTATTAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGGGTGGCTGGCTGGCGTCGCCGGCCAGGCGCGCCGGGAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGgc                                                                    <  2:431799/150‑1 (MQ=255)                                                                                    ccGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCCGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCAt                                                           >  2:442542/1‑150 (MQ=255)                                                                                                  gtgtGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACCGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATgg                                             <  1:546642/150‑1 (MQ=255)                                                                                                       gCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTgg                                                                                                                                    <  2:344857‑M2/58‑3 (MQ=255)                                                                                                       gCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTgg                                                                                                                                    >  1:344857‑M2/1‑56 (MQ=255)                                                                                                       gCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCttt                                        >  1:264623/1‑150 (MQ=255)                                                                                                         cTATCAACAACCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTggctgttgataggccacacctaccccgacccggcttccctggccgaggatctgctcgacgagcacccgggcgaacgcgacatcgccctgtacgtgg                                      <  1:614305‑M2/150‑97 (MQ=255)                                                                                                          tATCAACAGCCGCCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCAt                                     <  1:326619/150‑1 (MQ=255)                                                                                                           aTCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATc                                    <  1:289424/150‑1 (MQ=255)                                                                                                            tCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTggctgttgataggccacacctaccccgacccggcttccctggccgaggatctgctc                                                                              <  1:828001‑M2/107‑57 (MQ=255)                                                                                                            tCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTggctgttgataggccacacctaccccgacccggcttccctggccgaggatctgctc                                                                              >  2:828001‑M2/1‑51 (MQ=255)                                                                                                              aaCAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTggctgttgataggccacacctaccccgacccggcttccctggccgaggatctgctcgacgagcacccgggcgaacgcgacatcgccctgtacgtggccgca                                 <  2:340857‑M2/150‑102 (MQ=255)                                                                                                                  gCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGa                             <  2:488120/150‑1 (MQ=255)                                                                                                                    cacgaCCAGCCGC‑GTGCCGT‑GCACTGCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGgcgc                                                                                     >  1:183408‑M1/6‑92 (MQ=255)                                                                                                                    cacgaCCAGCCGC‑GTGC‑CGTGCACTGCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGgcgc                                                                                     <  2:183408‑M1/87‑1 (MQ=255)                                                                                                                      gCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGATTcc                         >  2:408527/1‑150 (MQ=255)                                                                                                                         CCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATc                                    >  2:422509‑M1/1‑136 (MQ=255)                                                                                                                         CCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATc                                    <  1:422509‑M1/136‑1 (MQ=255)                                                                                                                          CAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGATTCCTTGt                     >  2:342131‑M1/1‑150 (MQ=255)                                                                                                                            cagccgcgtgccgtgcactgcggctggTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGCCAATAAGCGAGGACATTGTCGTGCATCGGTCAGATTCCTTGt                     >  2:8091‑M2/28‑150 (MQ=255)                                                                                                                             CCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAg                                                                                             <  2:367193‑M1/75‑1 (MQ=255)                                                                                                                             CCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAg                                                                                             >  1:367193‑M1/1‑75 (MQ=255)                                                                                                                               ccgcgtgccgtgcactgcggctggTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCg                                                                                                >  2:715221‑M2/25‑72 (MQ=255)                                                                                                                               ccgcgtgccgtgcactgcggctggTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCg                                                                                                <  1:715221‑M2/48‑1 (MQ=255)                                                                                                                               GCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGATTCCTTGTTCGCt                >  1:632873‑M1/1‑150 (MQ=255)                                                                                                                                          gcac‑gCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGc                                                       <  2:280374/101‑1 (MQ=255)                                                                                                                                          gcac‑gCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGc                                                       >  1:280374/1‑101 (MQ=255)                                                                                                                                           cac‑gCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGATTCCTTGTTCGCTCAGCCACAGGt     <  1:561233/150‑1 (MQ=255)                                                                                                                                               gcggctggTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGATTCCTTGTTCGCTCAGCCACAGGTTCa  >  1:394968‑M2/9‑150 (MQ=255)                                                                                                                                                       |                                                                                                                                              CAACACCTGCTGCGGTGCGGCCACGTACAGGGCGATGTCGCGTTCGCCCGGGTGCTCGTCGAGCAGATCCTCGGCCAGGGAAGCCGGGTCGGGGTAGGTGTGGCCTATCAACAGCCGGCCCCAGCCGCAGTGCACG‑GCAC‑GCGGCTGGTCGTGTGGCTGGCTGCCGTCGCCGGCCAGGCGCGCCTGCAGGCGCTCGTAGGACGGCGCCTGGCCGCGCAGCAGGCGCTGACCATAAGCGATTTCATGGGCTTTCATCGGTCAGATTCCTTGTTCGCTCAGCCACAGGTTCA  >  NC_002947/1949443‑1949732

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.