New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2295816	52 (1.640)	5 (0.160)	5/238	NT	10.4%	intergenic (+19/+114)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
	?	NC_002947	= 2295903	36 (1.180)					intergenic (+106/+27)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein

CGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAACTGGC  >  NC_002947/2295755‑2296045                                                                                                                                                     |                                                                                                                                               cgcCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACg                                                                                                                                               <  1:712713‑M2/150‑2 (MQ=255) cgcCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTCGCTTGTGTGAGGTCCTTGTGGGCGCGCGCATCCCCGCGAACACCCACCGAGCCGGTGCCATCCACCGCGGCGCGCGCTTCGCGGGCATCCCTGCTCCCACCCg                                                                                                                                               >  2:109702/1‑150 (MQ=37)   ccAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACgga                                                                                                                                             >  2:537719‑M2/1‑147 (MQ=255)   ccAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACgga                                                                                                                                             >  1:534102‑M2/1‑147 (MQ=255)   ccAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCAGCTTCGCGGGCATGCCCGCTCCCACACgga                                                                                                                                             >  2:828784‑M2/1‑147 (MQ=255)    cAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACggac                                                                                                                                            >  2:703802‑M2/1‑146 (MQ=255)              gCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAg                                                                                                                                  >  1:730202/1‑150 (MQ=255)                     tGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATg                                                                                                                           <  2:581407/150‑1 (MQ=255)                     tGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGAACCATGTGCAGCCCGATg                                                                                                                           <  2:653353/150‑1 (MQ=255)                          ggCAAGCACCCCCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTaa                                                                                                                      <  1:838187/150‑1 (MQ=255)                               gCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGTCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTTCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGc                                                                                                                 <  1:691590/150‑1 (MQ=255)                                caccaccacTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCg                                                                                                                <  2:730202/150‑1 (MQ=255)                                      cacTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGAtcagtg                                                                                                                       <  2:96045/137‑6 (MQ=255)                                      cacTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGAtcagtg                                                                                                                       >  1:96045/1‑132 (MQ=255)                                      cacTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCAt                                                                                                          <  2:712713/150‑1 (MQ=255)                                      cacTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCAt                                                                                                          >  2:517110/1‑150 (MQ=255)                                                         aGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTcc                                                                                       <  2:726640/150‑1 (MQ=255)                                                           gTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGa                                                                                     >  2:671493/1‑150 (MQ=255)                                                                  tgGGGGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAagccagc                                                                              <  2:799000/150‑1 (MQ=255)                                                                           gCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACggaccccacacaagccagatcagtggtggtgcttgccactcagggccgcatggaaattggcgctctggcgcaggt                                                                     <  1:714861‑M2/150‑76 (MQ=255)                                                                           gCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACGCATGTGCAGCCCGATGTTTAATCATCGGACCATGATTGCCTTGGTCAGCTCCGAATCCAGCCACCCCTca                                                                     >  2:605045/1‑149 (MQ=38)                                                                            cATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTcca                                                                    <  1:671493/150‑1 (MQ=255)                                                                            cATGCCCGCCAACACCGGCAGAGCCGGTGCCAGCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCAACCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTcca                                                                    <  1:825519/150‑1 (MQ=255)                                                                             aTGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACggacctcacacaagccagatcagtggtggtgcttgccactcagggccgca                                                                                              >  1:181215‑M2/1‑73 (MQ=255)                                                                             aTGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACggacctcacacaagccagatcagtggtggtgcttgccactcagggccgca                                                                                              <  2:181215‑M2/123‑51 (MQ=255)                                                                               cccccCGAACGCGGCCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTccagcc                                                                 <  1:109702/149‑1 (MQ=255)                                                                                 ccGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCAt                                                                                                                                        >  2:168583/1‑77 (MQ=255)                                                                                 ccGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCAt                                                                                                                                        <  1:168583/77‑1 (MQ=255)                                                                                  cgcgAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACggacctcacacaagccagatcagtggtggtgcttgccactcagggccgcatggaaattggcgctctggc                                                                           <  1:421036‑M2/137‑70 (MQ=255)                                                                                  cgcgAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACggacctcacacaagccagatcagtggtggtgcttgccactcagggccgcatggaaattggcgctctggc                                                                           >  2:421036‑M2/1‑68 (MQ=255)                                                                                  cgcgAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTccagc                                                                  >  1:160275/1‑146 (MQ=255)                                                                                  cgcgAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTccagc                                                                  <  2:160275/146‑1 (MQ=255)                                                                                                   ccGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATaa                                             <  1:517110/150‑1 (MQ=255)                                                                                                    cGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAg                                            >  1:344860/1‑150 (MQ=255)                                                                                                     ggTGCCAGCCACCGCGGGGCCCGCTTCGCCGGCATACCCGCTCCCACACGGACCCATGTGCAGCCCGAGGTTTAATCAGCGGAACATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAgc                                           <  1:80524/150‑1 (MQ=255)                                                                                                          cATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGAc                                                                                                             <  2:430540/79‑1 (MQ=255)                                                                                                          cATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGAc                                                                                                             >  1:430540/1‑79 (MQ=255)                                                                                                          cATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCt                                      >  1:627448/1‑150 (MQ=255)                                                                                                           aTCCACCGCGGTGCCTGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCGCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCGCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTc                                     >  2:47077/1‑150 (MQ=255)                                                                                                           aTCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGc                                                                                                    <  2:234408/87‑1 (MQ=255)                                                                                                           aTCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGc                                                                                                    >  1:234408/1‑87 (MQ=255)                                                                                                           aTCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACAGGCGGATAAGCCGCCTc                                     >  1:213233/1‑150 (MQ=255)                                                                                                               aCCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGaa                                                                                              <  1:775309/89‑1 (MQ=255)                                                                                                               aCCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGaa                                                                                              >  2:775309/1‑89 (MQ=255)                                                                                                                    ggTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCa                            >  2:557274/1‑150 (MQ=255)                                                                                                                          gtgttCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCgg                      <  1:371399/147‑1 (MQ=255)                                                                                                                                gcaggCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGCTTAATAAGCCGGGGATGGTTGCCATGCACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGAc                <  2:416939/147‑1 (MQ=255)                                                                                                                                 cgGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGAcc               >  2:833656/1‑150 (MQ=255)                                                                                                                                  gggCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGAccc              >  2:658642/1‑150 (MQ=255)                                                                                                                                                 cacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAACTGgc  <  2:142551/147‑1 (MQ=255)                                                                                                                                                 cacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAACTGgc  >  1:142551/1‑147 (MQ=255)                                                                                                                                                     |                                                                                                                                               CGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAACTGGC  >  NC_002947/2295755‑2296045

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.