New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2311645 =	26 (0.820)	3 (0.100)	3/232	NT	11.0%	coding (1254/1260 nt)	PP_2034	membrane protein
	?	NC_002947	2311674 =	24 (0.810)					coding (1225/1260 nt)	PP_2034	membrane protein

AACAGTGTGCTTGATGTGCTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCGTTGGGCAGGCGCTGATCGAGCATCCAGCCGAACGCCACCGGCCCGATGGCACCGCCGACGTTGAACCCGG  >  NC_002947/2311526‑2311823                                                                                                                                                     |                                                                                                                                                      aaCAGTGTGCTTGATGTGCTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCtt                                                                                                                                                      >  2:379970/1‑150 (MQ=255)                   gctcgatcagcgcctgcccaacgggattttcgtcgcatcggtggtgttcatgctgctgacggtgctgctgaccctggcacaggagatgtattcagccagaaggcgcgcgccagctgttcagtcgcgcgccTTCTGGCTGAATACATCTcc                                                                                                                                    <  2:179010‑M2/20‑1 (MQ=255)                         gTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGcc                                                                                                                              >  2:307693/1‑150 (MQ=255)                         gTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGcc                                                                                                                              >  2:244289/1‑150 (MQ=255)                            aaTCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAgg                                                                                                                           >  2:256472/1‑150 (MQ=255)                              tCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGt                                                                                                                         >  1:769784/1‑150 (MQ=255)                                  ccGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTcagc                                                                                                                     <  1:256472/150‑1 (MQ=255)                                    ccaacgggattttcgtcgcatcggtggtgttcatgctgctgacggtgctgctgaccctggcacaggagatgtattcagccagaaGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTg                                                                                                                                                   <  1:763688‑M1/34‑1 (MQ=255)                                    ccaacgggattttcgtcgcatcggtggtgttcatgctgctgacggtgctgctgaccctggcacaggagatgtattcagccagaaGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTg                                                                                                                                                   >  2:763688‑M1/85‑118 (MQ=255)                                            gcgggcgCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATTCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTca                                                                                                           >  2:502841/1‑150 (MQ=255)                                                           aTGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAAcacca                                                                                            >  1:400480/1‑150 (MQ=255)                                                           aTGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAAcacca                                                                                            >  2:382797/1‑150 (MQ=255)                                                             gCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTAGAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACaccacc                                                                                          >  2:554530/1‑150 (MQ=255)                                                               cAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAGTACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGa                                                                                        >  1:814392/1‑150 (MQ=255)                                                               cAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGa                                                                                        >  1:718258/1‑150 (MQ=255)                                                                        gcAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTTTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTTCCAGGGTCAGCAGCACCGTCACCAGCATGAACACCACCGATGCGACGaa                                                                               >  2:186269/1‑150 (MQ=255)                                                                              aatgaCTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGaa                                                                                                                                             >  2:508603/1‑82 (MQ=255)                                                                              aatgaCTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGaa                                                                                                                                             <  1:508603/82‑1 (MQ=255)                                                                               atgaCTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCg                                                                        <  1:379970/150‑1 (MQ=255)                                                                               atgaCTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCg                                                                        <  1:244289/150‑1 (MQ=255)                                                                                    tGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCGTTggg                                                                   <  2:814392/150‑1 (MQ=255)                                                                                          tggcctggcAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTc                                                                                                            >  2:155985/1‑103 (MQ=255)                                                                                          tggcctggcAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTc                                                                                                            <  1:155985/103‑1 (MQ=255)                                                                                                    ggagatgtattcagccagaaGGCGCGCGACTGAACAGCTGGCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCGTTGGGCAGGCGCTGATCGAGc                                                   <  2:179010‑M1/130‑1 (MQ=255)                                                                                                       ttgtACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCGTTGGGCAGGCGCTGATCGAGCATc                                                <  2:769784/150‑1 (MQ=255)                                                                                                         gtACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCGTTGGGCAGGCGCTGATCGAGCATCCa                                              <  1:231344/150‑1 (MQ=255)                                                                                                                   tACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCGTTGGGCAGGCGCTGATCGAGCATCCAGCCGAACGcc                                    >  2:352224/1‑150 (MQ=255)                                                                                                                   cagaaggcgcgcgactgaacagctggcgcgcgccTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCGTTgg                                                                    <  1:763688‑M2/84‑1 (MQ=255)                                                                                                                   cagaaggcgcgcgactgaacagctggcgcgcgccTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCGTTgg                                                                    >  2:763688‑M2/35‑118 (MQ=255)                                                                                                                         GCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCGTTGGGCAGGCGCTGATCGAGCATCCAGCCGAACGCCACCGGc                              >  1:382797‑M1/1‑150 (MQ=255)                                                                                                                           gagaGCCAGCTGTTCAGTGGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCAGCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCGTTGGGCAGGCGCTGATCGAGCATCCAGCCGTACGCCACCGGccc                            <  2:613130‑M1/146‑1 (MQ=255)                                                                                                                              CGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACAAAAATCCCGTTGGGCAGGCGCTGATCGAGCATCCAGCCGAACGCCACCGGCCCGAt                         >  2:718258‑M1/1‑150 (MQ=255)                                                                                                                                 cAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCGTTGGGCAGGCGCTGATCGAGCATCCAGCCGAACGCCACCGGCCCGATGGc                      >  1:273453/1‑150 (MQ=255)                                                                                                                                      gTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCGTTGGGCAGGCGCTGATCGAGCATCCAGCCGAACGCCACAGGCCCGAGTGCAccgc                 >  2:450087/1‑150 (MQ=255)                                                                                                                                                     ttCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCGTTGGGCAGGCGCTGATCGAGCATCCAGCCGAACGCCACCGGCCCGAt                         >  2:134631/1‑127 (MQ=255)                                                                                                                                                     ttCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCGTTGGGCAGGCGCTGATCGAGCATCCAGCCGAACGCCACCGGCCCGAt                         <  1:134631/127‑1 (MQ=255)                                                                                                                                                     ttCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCGTTGGGCAGGCGCTGATCGAGCATCCAGCCGAACGCCACCGGCCCGATGGCACCGCCGACGTTGAACCCgg  >  1:118410/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                      AACAGTGTGCTTGATGTGCTGTTCGTCAATCGGCCGGGGGCAGGCGGGCGCGTGGTGCATGCCAACCCGGCGCAATGAATGACTGATCCTGGCCTGGCAATGTTGTACCGGGCCTACAGGGCGCGCGCCAGCTGTTCAGTCGCGCGCCTTCTGGCTGAATACATCTCCTGTGCCAGGGTCAGCAGCACCGTCAGCAGCATGAACACCACCGATGCGACGAAAATCCCGTTGGGCAGGCGCTGATCGAGCATCCAGCCGAACGCCACCGGCCCGATGGCACCGCCGACGTTGAACCCGG  >  NC_002947/2311526‑2311823

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.