New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2726286 =	20 (0.630)	6 (0.200)	6/236	NT	20.7%	coding (413/1083 nt)	PP_2387	hypothetical protein
	?	NC_002947	2726323 =	27 (0.900)					coding (376/1083 nt)	PP_2387	hypothetical protein

TTCGCTAAAACTGTTGAGAAAGGCCTGGTAGGCCTTGGCGTGCTGCGGGTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTGTGTGTTCGTCGGAGCTGGCGCCGATGCCCAGGGCTGTGGAGCCGC  >  NC_002947/2726177‑2726469                                                                                                                                                   |                                                                                                                                                   gaacacacagtggcctcgcacctgtcgatgctcacgggcgaagtctggctgagcctggccggctgcgggctgaacgccacccaggaattgatgatgttcctgacccaccAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCtggtg                                                                                                                                                 <  2:785812‑M1/41‑1 (MQ=255)  cccacacactggccacacagctgtgcatgctcgcgggcgaagtctggctgagcctggccggctgcgggctgaacgccacccaggaattgatgatgttcctgacccaccAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCtggtgg                                                                                                                                                >  2:397199‑M1/109‑150 (MQ=255)                  gaAAGGCCTGGTAGGCCTTGGCGTGCTGCGGGTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACAtcatca                                                                                                                                >  1:219494/1‑150 (MQ=255)                     aGGCCTGGTAGGCCTTGGCGTGCTGCGGGTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAAtt                                                                                                                             >  1:649029/1‑150 (MQ=255)                            atgctcacgggcgaagtctggctgagcctggccggctgcgggctgaacgccacccaggaattgatgatgttcctgacccaccA‑‑‑‑‑‑CCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTggg                                                                                                                                               >  1:183781‑M1/83‑119 (MQ=255)                            atgctcacgggcgaagtctggctgagcctggccggctgcgggctgaacgccacccaggaattgatgatgttcctgacccaccA‑‑‑‑‑‑CCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTggg                                                                                                                                               <  2:183781‑M1/37‑1 (MQ=255)                                    gggcgaagtctggctgagcctggccggctgcgggctgaacgccacccaggaattgatgatgttcctgacccaccAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCa                                                                                                              >  1:785812‑M1/75‑150 (MQ=255)                                         tgctgcGGGTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCg                                                                                                         <  1:401582/150‑1 (MQ=255)                                                  tCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGcc                                                                                                >  2:277729/1‑150 (MQ=255)                                                                       tgaacgccacccaggaattgatgatgttcctgacccaccagcaccgccttggccaactcggccatgtggtggtgctGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGccc                                                                           >  1:785812‑M2/77‑150 (MQ=255)                                                                           acaGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCa                                                                                                              >  2:794389/1‑111 (MQ=255)                                                                           acaGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCa                                                                                                              <  1:794389/111‑1 (MQ=255)                                                                               ggCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGtt                                                                                                                <  2:74266/105‑1 (MQ=255)                                                                               ggCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGtt                                                                                                                >  1:74266/1‑105 (MQ=255)                                                                                gCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATc                                                                  <  1:277729/150‑1 (MQ=255)                                                                                  ttCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAAt                                                                                                                              <  2:431533/88‑1 (MQ=255)                                                                                  ttCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAAt                                                                                                                              >  1:431533/1‑88 (MQ=255)                                                                                        ggCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTg                                                          >  1:759044/1‑150 (MQ=255)                                                                                             ggCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCGGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAgg                                                     <  2:566240/150‑1 (MQ=255)                                                                                                 gTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTc                                                                               >  1:6198/1‑120 (MQ=255)                                                                                                 gTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTc                                                                               <  2:6198/120‑1 (MQ=255)                                                                                                 gTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCAc                                                 >  2:413700/1‑150 (MQ=255)                                                                                                         ccaccagcaccgccttggccaactcggccatgtggtggtgctGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGCGAGCATGCACAGCTGTGTGGCCagtgtgtggg                                         >  2:397199‑M2/43‑148 (MQ=255)                                                                                                         cACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTGTGTGtt                                         >  2:132799/1‑150 (MQ=255)                                                                                                          caccagcaccgccttggccaactcggccatgtggtggtgctGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTGTGTGTtc                                        <  2:785812‑M2/109‑1 (MQ=255)                                                                                                          aCTGAGCACCACCACATGGCCGAGTTGGCCCAGGCGGTTCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTGTGTGTtc                                        >  2:423614/1‑150 (MQ=255)                                                                                                          aCTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTGTGTGTtc                                        <  1:413700/150‑1 (MQ=255)                                                                                                            tGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTGTGTGTtcgt                                      >  2:47439/1‑150 (MQ=255)                                                                                                              cccaccagcaccgccttggccaactcggccatgtggtGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCAt                                                                   >  1:183781‑M2/38‑119 (MQ=255)                                                                                                              cccaccagcaccgccttggccaactcggccatgtggtGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCAt                                                                   <  2:183781‑M2/82‑1 (MQ=255)                                                                                                               GCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTGTGTGTTCGTCgg                                   <  1:366721‑M1/150‑1 (MQ=255)                                                                                                                CACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTGTGTGTTCGTCGGa                                  >  1:47439‑M1/1‑150 (MQ=255)                                                                                                                  ccgccttggccaactcggccatgtggtggtgctGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTGTGTGTTCGTCGGAGc                                >  2:826774‑M2/34‑150 (MQ=255)                                                                                                                     ccacATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGCGCGAGGCCACTGTGTGTTCGTCGGAGCTgg                             >  2:209393/1‑150 (MQ=255)                                                                                                                         aTGGCCGAGTTGGCCACGGCGGTGCTGGTGGCACAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTGTGTGTTCGTCGGAGCTGGCGcc                         <  2:649029/150‑1 (MQ=255)                                                                                                                             ccGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTGTGTGTTCGTCGGAGCTGGCGCCGATg                     >  1:201200/1‑150 (MQ=255)                                                                                                                              cGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTGTGTGTTCGTCGGAGCTGGCGCCGATGc                    >  1:301380/1‑150 (MQ=255)                                                                                                                                    ggCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTGTGTGTTCGTCGGAGCTGGCGCCGATGCCCAggg              <  2:219494/150‑1 (MQ=255)                                                                                                                                      ccAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTGTGTGTTCGTCGGAGCTGGCGCCGATGCCCAGGGCt            >  2:809249/1‑150 (MQ=255)                                                                                                                                       cAAGGCGGCGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCGCAGCCCGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTGTGCGTTCGTCGGAGCTGACGCCGATGCCCAGGGCtg           >  2:224101/1‑150 (MQ=255)                                                                                                                                        aaGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTGTGTGTTCGTCGGAGCTGGCGCCGATGCCCAGGGCtgt          <  2:301380/150‑1 (MQ=255)                                                                                                                                            cGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTGTGTGTTCGTCGGAGCTGGCGCCGATGCCCAGGGCTGTGGAg      <  2:366721/150‑1 (MQ=255)                                                                                                                                                gctGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTGTGTGTTCGTCGGAGCTGGCGCCGATGCCCAGGGCTGTGGAgccgc  <  1:826774‑M2/147‑1 (MQ=255)                                                                                                                                                gctGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTGTGTGTTCGTCGGAGCTGGCGCCGATGCCCAGGGCTGTGGAgccgc  <  1:708719‑M2/147‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   TTCGCTAAAACTGTTGAGAAAGGCCTGGTAGGCCTTGGCGTGCTGCGGGTCGTTGGTACCTGCGAGGACTTCACACAGGGCTTCGTGGGCCAGGCTGTTGAGGCCACTGAGCACCACCACATGGCCGAGTTGGCCAAGGCGGTGCTGGTGGGTCAGGAACATCATCAATTCCTGGGTGGCGTTCAGCCCGCAGCCGGCCAGGCTCAGCCAGACTTCGCCCGTGAGCATCGACAGGTGCGAGGCCACTGTGTGTTCGTCGGAGCTGGCGCCGATGCCCAGGGCTGTGGAGCCGC  >  NC_002947/2726177‑2726469

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.