New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2981446 =	37 (1.170)	3 (0.100)	3/236	NT	7.7%	coding (962/1734 nt)	PP_2607	hypothetical protein
	?	NC_002947	2981502 =	37 (1.230)					coding (906/1734 nt)	PP_2607	hypothetical protein

CCGGCTTGGCGCGGTCTGTGACCAGGTGCGGGAAGCGCTCACGTTCACCATCGGCATGACGTAGTTCGGAAACCGGTGCCCAGAAGAAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTGCGCCTGCTGCGAATCCTCCCATGGCGCACACCACGCCACCACGGGCCATTACCC  >  NC_002947/2981354‑2981626                                                                                                                                                     |                                                                                                                             ccGGCTTGGCGCGGTCTGTGACCAGGTGCGTGAAGCGCTCACGTTCACCATCGGCATGACGTAGTTCGGAAACCGGTGCCCAGAAGAAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTc                                                                                                                             >  1:794986/1‑150 (MQ=255) ccGGCTTGGCGCGGTCTGTGACCAGGTGCGGGAAGCGCTCACGTTCACCATCGGCATGACGTAGTTCGGAAACCGGTGCCCAGAAGAAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTc                                                                                                                             >  1:198163/1‑150 (MQ=255) ccGGCTTGGCGCGGTCTGTGACCAGGTGCGGGAAGCGCTCACGTTCACCATCGGCATGACGTAGTTCGGAAACCGGTGCCCAGAAGAAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTc                                                                                                                             <  2:443540/150‑1 (MQ=255) ccGGCTTGGCGCGGTCTGTGACCAGGTGCGGGAAGCGCTCACGTTCACCATCGGCATGACGTAGTTCGGAAACCGGTGCCCAGAAGAAGTTAGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTc                                                                                                                             >  2:582328/1‑150 (MQ=255)        gacgcgGTCTGTGACCAGGTGCGGGAAGCGCTCACGTTCACCATCGGCATGACGTAGTTCGGAAACCGGTGCCCAGAAGAAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGtt                                                                                                                      >  2:17567/3‑150 (MQ=255)          cgcgGTCTGTGACCAGGTGCGGGAAGCGCTCACGTTCACCATCGGCATGACGTAGTTCGGAAACCGGTGCCCAGAAGAAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTgg                                                                                                                    >  2:770173/1‑150 (MQ=255)           gcgGTCTGTGACCAGGTGCGGGAAGCGCTCACGTTCACCATCGGCATGACGTAGTTCGGAAACCGGTGCCCAGAAGAAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGc                                                                                                                   <  2:645484/150‑1 (MQ=255)               tCTGTGACCAGGTGCGGGAAGCGCTCACGTTCACCATCGGCATGACGTAGTTCGGAAACCGGTGCCCAGAAGAAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCggt                                                                                                               <  1:770173/150‑1 (MQ=255)                 tgtgACCAGGTGCGGGAAGCGCTCACGTTCACCATCGGCATGACGTAGTTCGGAAACCGGTGCCCAGAAGAAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCggtgg                                                                                                             >  2:305406/1‑150 (MQ=255)                 tgtgACCAGGTGCGGGAAGCGCTCACGTTCACCATCGGCATGACGTAGTTCGGAAACCGGTGCCCAGAAGAAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCggtgg                                                                                                             >  1:701539/1‑150 (MQ=255)                                    taccgcccggctcaaaaggcgccgcacctgaccctgtcaccaccggccaacgacggaGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCcgtc                                                                                                                         <  2:483508‑M1/62‑1 (MQ=255)                                    taccgcccggctcaaaaggcgccgcacctgaccctgtcaccaccggccaacgacggaGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCcgtc                                                                                                                         >  1:483508‑M1/58‑119 (MQ=255)                                       tCACGTTCACCATCGGCATGACGTAGTTCGGAAACCGGTGCCCAGAAGAAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGcc                                                                                       >  2:848148/1‑150 (MQ=255)                                             tCACCATCGGCATGACGTAGTTCGGAAACCGGTGCCCAGAAGAAGTTGGCCGCCAGGCCCTCGCCCTCGGCTTCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGa                                                                                 <  2:360979/150‑1 (MQ=255)                                                   tCGGCATGACGTAGTTCGGAAACCGGTGCCCAGAAGAAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCggg                                                                           <  2:794986/150‑1 (MQ=255)                                                      gCATGACGTAGTTCGGAAACCGGTGCCCAGAAGAAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCggtggt                                                                                                            <  2:803692/114‑1 (MQ=255)                                                      gCATGACGTAGTTCGGAAACCGGTGCCCAGAAGAAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCggtggt                                                                                                            >  1:803692/1‑114 (MQ=255)                                                      gCATGACGTAGTTCGGAAACCGGTGCCCAGAAGAAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGt                                                                                               <  2:803225/127‑1 (MQ=255)                                                      gCATGACGTAGTTCGGAAACCGGTGCCCAGAAGAAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGt                                                                                               >  1:803225/1‑127 (MQ=255)                                                        aTGACGTAGTTCGGAAACCGGTGCCCAGAAGAAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTTACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTa                                                                      <  1:690659/150‑1 (MQ=255)                                                             gTAGTTCGGAAACCGGTGCCCAGAAGAAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTcgg                                                                 >  2:708887/1‑150 (MQ=255)                                                                       aaCCGGTGCCCAGAAGAAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTgc                                                       <  1:17567/150‑1 (MQ=255)                                                                          cGGTGCCCAGAAGAAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTGCGcc                                                    >  2:579169/1‑150 (MQ=255)                                                                            gTGCCCAGAAGAAGTTGGCCGCCAGGCTCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTgc                                                       <  2:789608/145‑1 (MQ=255)                                                                            gTGCCCAGAAGAAGTTGGCCGCCAGGCTCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTgc                                                       >  1:789608/1‑145 (MQ=255)                                                                                  agaagaAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTgcggc                                                                                          >  2:687537/1‑104 (MQ=255)                                                                                  agaagaAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTgcggc                                                                                          <  1:687537/104‑1 (MQ=255)                                                                                  agaagaAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCtt                                                                                     >  2:597605/1‑109 (MQ=255)                                                                                  agaagaAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCtt                                                                                     <  1:597605/109‑1 (MQ=255)                                                                                     agaagTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTGCGCCTGCTGCGAAtc                                         <  2:198163/150‑1 (MQ=255)                                                                                       gacggagccgccctgcgccttgcccaggccgtggcagcagccgagggcgagggcctggcggcTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTa                                                                      >  1:483508‑M2/63‑119 (MQ=255)                                                                                       gacggagccgccctgcgccttgcccaggccgtggcagcagccgagggcgagggcctggcggcTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTa                                                                      <  2:483508‑M2/57‑1 (MQ=255)                                                                                          ttGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTGCGCCTGCTGCGAATCCTccc                                    >  1:424012/1‑150 (MQ=255)                                                                                             GCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTGCGCCTGCTGCGAATCCTCCCATg                                 >  1:579169‑M1/1‑150 (MQ=255)                                                                                               CGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTGCGCCTGCTGCGAATCCTCCCATGgc                               >  1:103240‑M1/1‑150 (MQ=255)                                                                                               CGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTGCGCCTGCTGCGAATCCTCCCATGgc                               >  2:190814‑M1/1‑150 (MQ=255)                                                                                                gccctgcgccttgcccaggccgtggcagcagccgagggcgagggcctggcggcTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTGCGCCTGCTGCGAATCCTCCCATGgcg                              >  1:477392‑M2/54‑150 (MQ=255)                                                                                                  CAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCCTTGAGCCTGCTGCGAATCCTCCCATGGCGCa                            >  1:582328‑M1/1‑150 (MQ=255)                                                                                                   aGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTGCGCCTGCTGCGAATCCTCCCATGGCGcac                           <  1:305406/150‑1 (MQ=255)                                                                                                     gccctcgccctcGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTGCGCCTGCTGCGAATCCTCCCATGGCGCacac                         >  1:767216/1‑150 (MQ=255)                                                                                                     gccctcgccctcGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTGCGCCTGCTGCGAATCCTCCCATGGCGCacac                         <  2:424012/150‑1 (MQ=255)                                                                                                           gccctcgGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTGCGCCTGCTGCGAATCCTCCCATGGCGCACACCACGcc                   <  2:767216/150‑1 (MQ=255)                                                                                                           gccctcgGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTGCGCCTGCTGCGAATCCTCCCATGGCGCACACCACGcc                   >  1:86626/1‑150 (MQ=255)                                                                                                            ccctcgGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTGCGCCTGCTGCGAATCCTCCCATGGCGCACACCACGcca                  <  2:327334/150‑1 (MQ=255)                                                                                                             cctcgGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTGCGCCTGCTGCGAATCCTCCCATGGCGCACACCACGccac                 >  2:116202/1‑150 (MQ=255)                                                                                                                        gcCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTGCGCCTGCTGCGAATCCTCCCATGGCGCACACCACGCCACCACGGGCCAtt      <  1:231023/150‑1 (MQ=255)                                                                                                                           aCGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTGCGCCTGCTGCGAATCCTCCCATGGCGCACACCACGCTACCACGGGCCATTAcc   <  2:701539/150‑1 (MQ=255)                                                                                                                            cGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTGCGCCTGCTGCGAATCCTCCCATGGCGCACACCACGCCACCACGGGCCATTAccc  <  1:708887/150‑1 (MQ=255)                                                                                                                              gCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTGCGCCTGCTGCGAATCCTCCCATGGCGCACACCACGCCACCACgg            <  1:793125/138‑1 (MQ=255)                                                                                                                              gCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTGCGCCTGCTGCGAATCCTCCCATGGCGCACACCACGCCACCACgg            >  2:793125/1‑138 (MQ=255)                                                                                                                                                     tCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCgg                                                                            >  1:466742/1‑51 (MQ=255)                                                                                                                                                     tCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCgg                                                                            <  2:466742/51‑1 (MQ=255)                                                                                                                                                     |                                                                                                                             CCGGCTTGGCGCGGTCTGTGACCAGGTGCGGGAAGCGCTCACGTTCACCATCGGCATGACGTAGTTCGGAAACCGGTGCCCAGAAGAAGTTGGCCGCCAGGCCCTCGCCCTCGGCTGCTGCCACGGCCTGGGCAAGGCGCAGGGCGGCTCCGTCGTTGGCCGGTGGTGACAGGGTCAGGTGCGGCGCCTTTTGAGCCGGGCGGTAGTCGGCGGCCATTGCGCCTGCTGCGAATCCTCCCATGGCGCACACCACGCCACCACGGGCCATTACCC  >  NC_002947/2981354‑2981626

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.