New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4022323 =	35 (1.110)	7 (0.240)	4/232	NT	19.0%	coding (27/942 nt)	PP_3547	NAD(P)‑binding oxidoreductase
	?	NC_002947	4022416 =	27 (0.910)					intergenic (‑67/+601)	PP_3547/emrB	NAD(P)‑binding oxidoreductase/multidrug transporter permease

TGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGC  >  NC_002947/4022267‑4022563                                                                                                                                                      |                                                                                                                                                    aacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactcaGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCg                                                                                                                                                     >  2:345065‑M1/57‑150 (MQ=255)        cgctcccatcatcaggcccctgcgctgcgctccggggttccctcactccGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAg                                                                                                                                              >  2:603740‑M1/50‑150 (MQ=255)            cttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGaa                                                                                                                                          <  1:139666/150‑1 (MQ=31)             ttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAAc                                                                                                                                         >  2:442778/1‑150 (MQ=32)             ttgatcttgatcttgatcttCGCGACGTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAAc                                                                                                                                         >  1:297707/1‑150 (MQ=17)                atcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAAcccc                                                                                                                                      >  2:773625/1‑150 (MQ=32)                   ttgatcttgatcttCGCGACTGCAGGAGGCCGAACGCAGGCCTTGCGGAGGAAGGTGACGGGCATGGATGCCGGTCAAGCGCTGAGGCGCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGa                                                                                                                                   <  2:628696/150‑1 (MQ=255)                       tcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGagcgc                                                                                                                               >  2:557158/1‑150 (MQ=32)                           gatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGTGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGagcgcagcg                                                                                                                           >  1:213696/1‑150 (MQ=17)                             tcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAgcgcagcgca                                                                                                                         >  2:551177/1‑150 (MQ=32)                                tCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAggg                                                                                                                      <  1:681511/150‑1 (MQ=32)                                          aggaggCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGgatgat                                                                                                            <  1:442778/150‑1 (MQ=32)                                          aggaggCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGAAACCCCGGAGCGCAGCGCAGGGGCCGgatgat                                                                                                            <  2:166410/150‑1 (MQ=17)                                                 ctcactccggccttgctcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacctgcctccgcaaggccGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCTGATGATGGGAgcg                                                                                                     >  2:603740‑M2/102‑150 (MQ=255)                                                        cggccttgctcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacctgcctccgcaaggccTGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGtt                                                                                              >  2:345065‑M2/95‑150 (MQ=255)                                                         ggccttgctcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcaacacccgccgcaaggccGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGTGAGCGCAGCGttt                                                                                             >  1:825619‑M2/94‑150 (MQ=255)                                                           gcttgctcccgggagtacgcgctgcaggccccatccatggggcctcagcgcttgacgggcatccatgcccgtcacctcccttcgcaagcccGGAGCGAGGGAACCCCGGAGCGTAGCGCAGGGGCCGGATGATAGGAGCGCAGCGttttt                                                                                           >  2:312878‑M2/92‑150 (MQ=255)                                                           CCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGttttt                                                                                           >  2:717822‑M1/1‑150 (MQ=255)                                                              TGCGGAGGCAGGTGACGTGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTgg                                                                                        >  2:213696‑M1/1‑150 (MQ=255)                                                                CGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCTTTTTTTTGtt                                                                                      >  1:557158‑M1/1‑150 (MQ=255)                                                                         ttGACGGGCATCCATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTg                                                                                         >  1:466743/2‑138 (MQ=16)                                                                         ttGACGGGCATCCATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTg                                                                                         <  2:466743/137‑1 (MQ=16)                                                                              gggCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGt                                                                        >  1:41853/1‑150 (MQ=32)                                                                                gCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGtt                                                                       >  1:592250/1‑149 (MQ=32)                                                                                gCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGtt                                                                       <  2:592250/149‑1 (MQ=32)                                                                                  cgaaggccccatcctggggcctcaccgcaaaacgggcatccatgcccgtcacctgcctccgcaaggccGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGa                                                                    >  1:450790‑M2/69‑150 (MQ=255)                                                                                  aTGTATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCCAGGACCGGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGa                                                                    <  1:270105/150‑1 (MQ=11)                                                                                  aTGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGa                                                                    <  1:551177/150‑1 (MQ=32)                                                                                        ccccGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGTAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACaaaaa                                                              <  1:375930/149‑1 (MQ=17)                                                                                          ccGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGt                                                            >  2:292964/1‑150 (MQ=32)                                                                                               aaGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTc                                                       >  2:558875/1‑150 (MQ=32)                                                                                                      ctcagcgcttgacgggcatccatgcccgtcacctgcctccgcaaggccGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCTGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTaa                                                <  1:603740‑M2/102‑1 (MQ=255)                                                                                                            ccAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGa                                          >  1:387283/1‑150 (MQ=32)                                                                                                            ccAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGa                                          >  2:27388/1‑150 (MQ=32)                                                                                                                    gggCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGa                                  <  1:773625/150‑1 (MQ=32)                                                                                                                    gggCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGGTTGACAGAGGACGACGCGCCGTAAGGGCGAAAAGGTGa                                  >  1:217037/1‑150 (MQ=11)                                                                                                                     ggCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTTAGTCGGCGTAAGGGCGTAATGgagat                                 >  1:346575/1‑149 (MQ=11)                                                                                                                               gcgGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGc                       >  2:377386/1‑150 (MQ=35)                                                                                                                                        gcctccgcaaggccGGAGTGAGGGAACCCCGGAGCGCAGCGACGCGCAAGCATTGTTGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCaaa              <  2:450790‑M2/136‑1 (MQ=255)                                                                                                                                                aaggccGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTTTTTTTTTTTTGTTGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGt      >  2:26943‑M2/7‑150 (MQ=255)                                                                                                                                                    ccGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGc  <  1:27388‑M2/148‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                    TGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGC  >  NC_002947/4022267‑4022563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.