| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4647603 = | 18 (0.570) | 4 (0.180) | 4/170 | NT | 29.3% | intergenic (+10/+121) | fusB/PP_4112 | elongation factor G 2/sulfate transporter |
| ? | NC_002947 | 4647711 = | 7 (0.320) | intergenic (+118/+13) | fusB/PP_4112 | elongation factor G 2/sulfate transporter | |||||
AGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCA‑ATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAACGGCCGAATAATCGAC > NC_002947/4647574‑4647855 | agaagaGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCACGGGTAAACCCCCTCCTACAGGCTGGCCGCACGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGATTACCGGCGAAGAGGCCGGCACAGACCGCAACAGtct > 2:213122/1‑148 (MQ=38) TTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCA‑ATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCg < 2:628748‑M1/150‑1 (MQ=255) GTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCA‑ATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGAc < 1:791858‑M1/150‑1 (MQ=255) CCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGtttt > 2:780629‑M1/1‑96 (MQ=255) CCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGtttt < 1:780629‑M1/96‑1 (MQ=255) CCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCA‑ATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTACGACAaatcc < 2:519754‑M1/150‑3 (MQ=255) gctcctacaggggggcgcacaatgtttgggcctgcggccatcctgtaggagcgggtttacccgcgaagaggccggcacagACCGCAACAGTTTTCA‑Atgctg < 2:498311‑M2/22‑1 (MQ=255) gctcctacaggggggcgcacaatgtttgggcctgcggccatcctgtaggagcgggtttacccgcgaagaggccggcacagACCGCAACAGTTTTCA‑Atgctg > 1:498311‑M2/81‑102 (MQ=255) TACAGGATGGCCGAGCACCTAAACATTGTGCGCCCCCCTGTAGAAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCA‑ATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCAcgc < 1:457841‑M1/150‑1 (MQ=255) CAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCA‑ATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGcac < 1:331245‑M1/143‑1 (MQ=255) CAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCA‑ATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGcac > 2:331245‑M1/1‑143 (MQ=255) aggggggcgcacaatgtttgggcctgcggccatcctgtaggagcgggtttacccgcgaagaggccggcacagACCGCAACAGTTTTCA‑ATGCTGCTc < 1:652658‑M2/25‑1 (MQ=255) aggggggcgcacaatgttggggcctgcggccatcctgtaggagcgggtttacccgcgaagaggccggcacagACCGCAACAGTTTTCA‑ATGCTGCTc > 2:652658‑M2/73‑97 (MQ=255) ggtcgtaGGCCCAAACATTGTGCGCCCCCCTGTAGCAGCGGGTTTACCCGCGAAGAGGCCGGCACCGA‑AACCATGGCTGCCATGTGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGc < 2:457841/144‑1 (MQ=25) ccAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCA‑ATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCt > 2:471313/1‑150 (MQ=255) ccAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCA‑ATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCt > 2:489059/1‑150 (MQ=255) aCATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCA‑ATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGc < 1:471313/150‑1 (MQ=255) gtgCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCA‑ATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAgc < 1:628748/150‑1 (MQ=255) tgCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCA‑ATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAgcg > 2:406849/1‑150 (MQ=255) ccgcgaagaggccggcacagACCGCAACAGTTTTCA‑ATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAAc > 1:824771‑M2/21‑150 (MQ=255) gcgaagaggccggcacagACCGCAACAGTTTTCA‑ATGCTGCTCGCCCACCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAgcgc < 1:376877‑M2/104‑1 (MQ=255) gcgaagaggccggcacagACCGCAACAGTTTTCA‑ATGCTGCTCGCCCACCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAgcgc > 2:376877‑M2/19‑122 (MQ=255) ccggcacagACCGCAACAGTTTTCA‑ATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAACGGCCGaataat < 1:489059‑M2/141‑1 (MQ=255) cacagACCGCAACAGTTTTCA‑ATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAACGGCCGAATAATCGAc > 2:292530‑M2/6‑150 (MQ=255) | AGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCA‑ATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAACGGCCGAATAATCGAC > NC_002947/4647574‑4647855 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |