New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5116432	26 (0.820)	4 (0.140)	4/232	NT	12.8%	coding (532/594 nt)	PP_4501	septation protein A
	?	NC_002947	= 5116448	30 (1.010)					coding (548/594 nt)	PP_4501	septation protein A

TCCTGTTCTGCGGCGCGGCCAACCTGTTCGTCGCCTTCACCTTCCAGGACTTCTGGGTGGACTTCAAGGTGTTCGGCAGCCTGGGCATGACCGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCGCGCCACCTGCACGATGACCCTTCTACCTCCAAACCCAAGGATTGACATGCTCTACGCCATTATCGCCAGCGACGTCGCAAACTCCCTGGAAAAGCGCCTGGCCGCCCGCCCGGCGCACATCGAACGCCTGCAGCAGCTCAAGGC  >  NC_002947/5116322‑5116593                                                                                                                               |                                                                                                                                                  tcCTGTTCTGCGGCGCGGCCAACCTGTTCGTCGCCTTCACCTTCCAGGACTTCTGGGTGGACTTCAAGGTGTTCGGCAGCCTGGGCATGACCGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCgcgc                                                                                                                                               >  2:803990‑M2/1‑127 (MQ=255) tcCTGTTCTGCGGCGCGGCCAACCTGTTCGTCGCCTTCACCTTCCAGGACTTCTGGGTGGACTTCAAGGTGTTCGGCAGCCTGGGCATGACCGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCgcgc                                                                                                                                               <  1:803990‑M2/131‑5 (MQ=255) tcCTGTTCTGCGGCGCGGCCAACCTGTTCGTCGCCTTCACCTTCCAGGACTTCTGGGTGGACTTCAAGGTGTTCGGCAGCCTGGGCATGACCGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCGCGCCACCTGCACGATGACCCtt                                                                                                                            >  1:693985/1‑150 (MQ=255)                     aaCCTGTTCGTCGCCTTCACCTTCCAGGACTTCTGGGTGGACTTCAAGGTGTTCGGCAGCCTGGGCATGACCGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCGCGCCACCTGCACGATGACCCTTCTACCTCCAAACCCAAGGAt                                                                                                        >  2:722932/1‑150 (MQ=255)                     aaCCTGTTCGTCGCCTTCACCTTCCAGGACTTCTGGGTGGACTTCAAGGTGTTCGGCAGCCTGGGCATGACCGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCGCGCCACCTGCACGATGACCCTTCTACCTCCAAACCCAAGGAt                                                                                                        <  1:541289/150‑1 (MQ=255)                     aaCCTGTTCGTCGCCTTCACCTTCCAGGACTTCTGGGTGGACTTCAAGGTGTTCGGCAGCCTGGGCATGACCGTGAGCTTCCTGGTGGCGCAAGGCGTGTACCTGTCGCGCCACCTGCACGATGACCCTTCTACCTCCAAACCCAAGGAt                                                                                                        <  1:696864/150‑1 (MQ=255)                      aCCTGGTCGTCTCCTTCACCTTCCAGGACTTCTGAGTGGACTTCAAGGTGTTCGGCAGCCTGGGCATGACCGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCGCGCCCCCTGCACGATGACTCAACTACCTCCTTCCCCATGGAtt                                                                                                       <  2:847316/150‑1 (MQ=255)                                 gCCTTCACCTTCCAGGACTTCTGGGTGGACTTCAAGGTGTTCGGCAGCCTGGGCATGAGCGTGATCTTACTGTTGGCGCAAGGCGTGTACCTGTCGCGCCACCTGCACGATCACCTTTCTATCTCCAAACCCAAGGTTTGACATGCTCTa                                                                                            >  2:326302/1‑150 (MQ=255)                                   cTTCACCTTCCAGGACTTCTGGGTGGACTTCAAGGTGTTCGGCAGCCTGGGCATGACCGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCGCGCCACCTGCACGATGACCCTTCTACCTCCAAACCCAAGGATTGACATGCTCTACg                                                                                          >  1:343486/1‑150 (MQ=255)                                           tCCAGGACTTCTGGGTGGACTTCAAGGTGTTCGGCAGCCTGGGCATGACCGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCGCGCCACCTGCACGATGACCCTTCTACCTCCAAACCCAAGGATTGACATGCTCTACGCCATTATc                                                                                  <  2:836998/150‑1 (MQ=255)                                                   ttCTGGGTGGACTTCAAGGTGTTCGGCAGCCTGGGCATGACCGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCGCGCCACCTGCACGATGACCCTTCTAc                                                                                                                        >  2:775857/1‑104 (MQ=255)                                                   ttCTGGGTGGACTTCAAGGTGTTCGGCAGCCTGGGCATGACCGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCGCGCCACCTGCACGATGACCCTTCTAc                                                                                                                        <  1:775857/104‑1 (MQ=255)                                                      tGGGTGGACTTCAAGGTGTTCGGCAGCCTGGGCATGACCGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCGCGCCACCTGCACGATGACCCTTCTACCTCCAAACCCAAGGATTGACATGCTCTACGCCATTATCGCCAGCGACGt                                                                       <  2:693985/150‑1 (MQ=255)                                                         gTGGACTTCAAGGTGTTCGGCAGCCTGGGCATGACCGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCGCGCCACCTGCACGATGACCCTTCTACCTCCAAACCCAAGGATTGACATGCCCTACGCCATTATCGCCAGCGACCTCGc                                                                    >  2:556468/1‑150 (MQ=255)                                                          tGGACTTCAAGGTGTTCGGCAGCCTGGGCATGACCGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCGCGCCACCTGCACGACGACCCTTCTACCTCCAAACCCAAGGATTGACATGCTCTACGCCATTATCGCCAGCGACGTCGCa                                                                   >  2:384116/1‑150 (MQ=255)                                                                  aaGGTGTTCGGCAGCCTGGGCATGACCGTGATCTTCCTGGTGGCGCAGGCCGTGTCCCTGTCGCGCTACATGCACGATATCCCTTCTACCTCCCAACCCAAGGATTGACATGCTCTACTCCATTATCGCCAGCGACGTCGCAAACTCCCt                                                           <  2:524339/150‑1 (MQ=255)                                                                  aaGGTGTTCGGCAGCCTGGGCATGACCGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCGCGCCACCTGCACGATGACCCTTCTACCTCCAAACCCAAGGATTGACATGCTCTACGCCATTATCGCCAGCGACGTCGCAAACTCCCt                                                           <  2:343486/150‑1 (MQ=255)                                                                   aGGTGTTCGGCAGCCTGGGCATGACCGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCGCGCCACCTGCACGATGACCCTTCTACCTCCAAACCCAAGGATTGACATGCTCTa                                                                                            >  2:546007/1‑116 (MQ=255)                                                                   aGGTGTTCGGCAGCCTGGGCATGACCGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCGCGCCACCTGCACGATGACCCTTCTACCTCCAAACCCAAGGATTGACATGCTCTa                                                                                            <  1:546007/116‑1 (MQ=255)                                                                            gCAGCCTGGGCATGACCGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCGCGCCACCTGCACGATGACCCTTCTACCTCCAAACCCAAGGATTGACATGCTCTACGCCATTATCGCCAGCGACGTCGCAAACTCCCTGGAAAAgcgc                                                 <  2:775181/150‑1 (MQ=255)                                                                            ccAGCCTGGGCATGGCGGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCACGCCACCTGCACGCTGACCCTTCTACCTCCAAACCCAAGGATTGACATGCTCTACGCCATTATCGCCAGCGACGTCGCAAACTCCCTGGAAAAgcgc                                                 >  2:80105/2‑150 (MQ=255)                                                                               gCCTGGGCATGACCGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCGCGCCACCTGCACGATGACCCTTCTACCTCCAAACCCAAGGATTGACATGCTCTACGCCATTATCGCCAGCGACGTCGCAAACTCCCTGGAAAAGCGCCTg                                              >  1:743297/1‑150 (MQ=255)                                                                               gCCTGGGCATGACCGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCGCGCCACCTGCACGACGACCCTTCTACCTCCAAACCCAAGGATTGACATGCTCTACGCCATTATCGCCAGCGACGTCGCAAACTCCCTGGAAAAGCGCCTg                                              <  1:384116/150‑1 (MQ=255)                                                                                       aTGACCGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCGCGCCACCTGCACGATGACCCTTCTAACTCCAAACCCAAGGATTGACATGCTCTa                                                                                            <  1:204758/96‑1 (MQ=255)                                                                                       aTGACCGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCGCGCCACCTGCACGATGACCCTTCTAACTCCAAACCCAAGGATTGACATGCTCTa                                                                                            >  2:204758/1‑96 (MQ=255)                                                                                              tGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCGCGCCACCTGCACGATGACCCTTCTACCTCCAAACCCAAGGATTGACATGCTCTACGCCATTATCGCCAGCGACGTCGCAAACTCCCTGGAAAAGCGCCTGGCCGCCCGCCCGgcg                               >  1:3167/1‑150 (MQ=255)                                                                                                       tggtggCGCAAGGCGTGTACCTGTCgcgccaccaggaagatcacggtcatgcccaggctgccgaacaccttgaagtcca                                                                                             <  1:759061‑M2/79‑55 (MQ=255)                                                                                                       tggtggCGCAAGGCGTGTACCTGTCgcgccaccaggaagatcacggtcatgcccaggctgccgaacaccttgaagtcca                                                                                             >  2:759061‑M2/1‑25 (MQ=255)                                                                                                          tggCGCAAGGCGTGTACCTGTCgcgccaccaggaagatcacggtcatgcccaggctgccgaacaccttgaagtccacccagaagtcctggaaggtgaaggcgacgaac                                                             >  2:91509‑M2/1‑22 (MQ=255)                                                                                                          tggCGCAAGGCGTGTACCTGTCgcgccaccaggaagatcacggtcatgcccaggctgccgaacaccttgaagtccacccagaagtcctggaaggtgaaggcgacgaac                                                             <  1:91509‑M2/108‑87 (MQ=255)                                                                                                                aaGGCGTGTACCTGTCGCGCCACCTGCACGATGACCCTTCTACCTCCAAACCCAAGGATTGACATGCTCTACGCCATTATCGCCAGCGACGTCGCAAACTCCCTGGAAAAGCGCCTGGCCGCCCGCCCGGCGCACATCGAACGCCTgcag             >  2:742295/1‑150 (MQ=255)                                                                                                                     gtgtACCTGTCGCGCCACCTGCACGATGACCCTTCTACCTCCAAACCCAAGGATTGACATGCTCTACGCCAtt                                                                                     <  2:324528/73‑1 (MQ=255)                                                                                                                     gtgtACCTGTCGCGCCACCTGCACGATGACCCTTCTACCTCCAAACCCAAGGATTGACATGCTCTACGCCAtt                                                                                     >  1:324528/1‑73 (MQ=255)                                                                                                                     gtgtACCTGTCGCGCCACCTGCACGATGACCCTTCTACCTCCAAACCCAAGGATTGACATGCTCTACGCCATTATCGCCAGCGACGTCGCAAACTCCCTGGAAAAGCGCCTGGCCGCCCGCCCGGCGCACATCGAACGCCTGCAGCAGCt        >  2:243141/1‑150 (MQ=255)                                                                                                                        tACCTGTCGCGCCACCTGCACGATGACCCTTCTACCTCCAAACCCAAGGATTGACATGCTCTACGCCATTATCGCCAGCGACGTCGCAAACTCCCTGGAAAAGCGCCTGGCCGCCCGCCCGGCGCACATCGAACGCCTGCAGCAGCTCaa     >  1:752242/1‑150 (MQ=255)                                                                                                                          ccTGTCGCGCCACCTGCACGATGACCCTTCTACCTCCAAACCCAAGGATTGACATGCTCTACGCCATTATCGCCAGCGACGTCGCAAACTCCCTGGAAAAGCGCCTTGCCGCCCGCCCGGCGCACATCGAACGCCTGCATCAGCTCaagg   <  2:806417/150‑1 (MQ=255)                                                                                                                           cTGTCGCGCCACCTGCACGATGACCCTTCTACCTCCAAACCCAAGGATTGACATGCTCTACGCCATTATCGCCAGCGACGTCGCAAACTCCCTGGAAAAGCGCCTGGCCGCCCGCCCGGCGCACATCGAACGCCTGCAGCAGCTCaaggc  >  1:160702/1‑150 (MQ=255)                                                                                                                               |                                                                                                                                                  TCCTGTTCTGCGGCGCGGCCAACCTGTTCGTCGCCTTCACCTTCCAGGACTTCTGGGTGGACTTCAAGGTGTTCGGCAGCCTGGGCATGACCGTGATCTTCCTGGTGGCGCAAGGCGTGTACCTGTCGCGCCACCTGCACGATGACCCTTCTACCTCCAAACCCAAGGATTGACATGCTCTACGCCATTATCGCCAGCGACGTCGCAAACTCCCTGGAAAAGCGCCTGGCCGCCCGCCCGGCGCACATCGAACGCCTGCAGCAGCTCAAGGC  >  NC_002947/5116322‑5116593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.