New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5235995	52 (1.640)	4 (0.130)	4/238	NT	7.7%	coding (1281/2325 nt)	fecA	outer membrane ferric citrate porin
	?	NC_002947	= 5236067	46 (1.510)					coding (1353/2325 nt)	fecA	outer membrane ferric citrate porin

CTGGACCAAGGCAGCTTCGTCTCGCTGTCGCCACGCGAGTACTGGGTGCGCGGCATCGAAACCCGCTTCTCGCAGGGCGTGGCCCTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGAAGCCCATGCCATCTACCTGGATGACCGCATCGACATCGGCCGCTGGACCATCACCCCGGGCGTGC  >  NC_002947/5235921‑5236212                                                                                                                                                    |                                                                                                                                                   cTGGACCAAGGCAGCTTCGTCTCGCTGTCGCCACGCGAGTACTGGGTGCGCGGCATCGAAACCCGCTTCTCGCAGGGCGTGGCCCTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAActg                                                                                                                                                 <  1:632500‑M2/150‑4 (MQ=255)       cAAGGCAGCTTCGTCTCGCTGTCGCCACGCGAGTACTGGGTGCGCGGCATCGAAACCCGCTTCTCGCAGGGCGTGGCCCTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTc                                                                                                                                           >  1:289556/1‑150 (MQ=255)                   gTCTCGCTGTCGCCACGCGAGTACTGGGTGCGCGGCATCGAAACCCGCTTCTCGCAGGGCGTGGCCCTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑g                                                                                                                              <  2:486499/150‑1 (MQ=255)                      tcGCTGTCGCCACGCGAGTACTGGGTGCGCGGCATCGAAACCCGCTTCTCGCAGGGCGTGGCCCTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAAc                                                                                                                           <  2:632500/150‑1 (MQ=255)                      tcGCTGTCGCCACGCGAGTACTGGGTGCGCGGCATCGAAACCCGCTTCTCGCAGGGCGTGGCCCTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAAc                                                                                                                           <  1:178040/150‑1 (MQ=255)                        gCTGTCGCCACGCGAGTACTGGGTGCGCGGCATCGAAACCCGCTTCTCGCAGGGCGTGGCCCTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACgg                                                                                                                         >  1:94365/1‑150 (MQ=255)                                   gcgAGTACTGGGTGCGCGGCATCGAAACCCGCTTCTCGCAGGGCGTGGCCCTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCcca                                                                                                              >  1:244825/1‑150 (MQ=255)                                    cgAGTACTGGGTGCGCGGCATCGAAACCCGCTTCTCGCAGGGCGTGGCCCTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCccac                                                                                                             <  1:187140/150‑1 (MQ=255)                                      aGTACTGGGTGCGCGGCATCGAAACCCGCTTCTCGCAGGGCGTGGCCCTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCccacca                                                                                                           <  2:342504/150‑1 (MQ=255)                                        tACTGGGTGCGCGGCATCGAAACCCGCATCTCGCAGGGCGTGGCGCTGGGAGCCAGCTGGCACGCTCTGGGCATCGGCT‑ACCGCTACGCAAACGAAGCCGGCCACGAACCGCGCTTCCGCTGGCCGGT‑GAACGGCAGCTTGCCCaccacc                                                                                                         >  2:153755/1‑150 (MQ=255)                                             gatGCTCGGCGTCGAAACCCTCTTCTGGAAGGGCGTGGCCCTCGGTGACCGCTGGCAGGAGCTGGACATCGGCG‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACGGCCGCCAg                                                                                                    >  2:713979/3‑150 (MQ=255)                                              gTGCGCTGCATCGAAACCCGCTTCTCGCAGGGCGTGGCCCTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGc                                                                                                   <  1:12578/150‑1 (MQ=255)                                               ggcgcGGTATCGAAACCCGCTTCTCGCAGGGCGTGGCCCTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGcc                                                                                                  <  1:298762/149‑1 (MQ=255)                                                        tCGAAACCCGCTTCTCGCAGGGCGTGGCCCTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGAcc                                                                                         >  2:513246/1‑150 (MQ=255)                                                               ccGCTTCTCGCAGGGCGTGGCCCTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGacac                                                                                  <  2:726680/150‑1 (MQ=255)                                                                 gCTTCTCGCAGGGCGTGGCCCTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACAccc                                                                                <  1:546702/150‑1 (MQ=255)                                                                  cTTCTCGCAGGGCGTGGCCCTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCg                                                                               >  2:814795/1‑150 (MQ=255)                                                                   ttCTCGCAGGGCGTGGCCCTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCAGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGt                                                                              >  2:743677/1‑150 (MQ=255)                                                                     ctcGCAGGGCGTGGCCCTGGGTGACAGCTGGCTCGAGCTGGGCATCGGCT‑ACCGGTACGTTAATGAAGGCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGTCCGCGACACCCGTgg                                                                            <  1:101752/150‑1 (MQ=255)                                                                          aGGGCGTGGCCCTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGgcagca                                                                       >  1:651794/1‑150 (MQ=255)                                                                           gggCGTGGCCCTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAActgcgagaagcgggtttcgatgccgc                                                                                                                          >  2:329078‑M2/1‑73 (MQ=255)                                                                           gggCGTGGCCCTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAActgcgagaagcgggtttcgatgccgc                                                                                                                          <  1:329078‑M2/99‑27 (MQ=255)                                                                            ggCGTGGCCCTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCAcc                                                                     <  2:289556/150‑1 (MQ=255)                                                                                cggCCCTGGTTGACAGCCGGGATGAGCTGGGCATCGGCT‑ACCGCTACGTCAACCAAGCCGGCCATTAACTGCGCTTCCGCGTGCCGGT‑GACCGGCAGCCTGCCCACCCCCGCCAGCCGCAACGACCGCCACACCCATGGCAGCACCGAAg                                                                 <  2:405412/149‑1 (MQ=255)                                                                                    ccTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAActgcgagaagcgggtttcgatgccgcgcacccagtactcgcgtggc                                                                                                      <  1:125695‑M2/110‑47 (MQ=255)                                                                                    ccTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAActgcgagaagcgggtttcgatgccgcgcacccagtactcgcgtggc                                                                                                      >  2:125695‑M2/1‑64 (MQ=255)                                                                                    ccTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGAAGCCCa                                                             >  2:73894/1‑150 (MQ=255)                                                                                         gTGACAGCTGGCACGAGCTGGGCATCGGCTCACCAC‑AGGCCAGACAAGCCGTCCACGAACTCCGCTTCCTCGCGGCAGTGGAACCGCCTGCT‑CCCGGCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGAGCCGAAGCCCATGCCa                                                        >  1:408874/1‑150 (MQ=255)                                                                                            aCAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGAAGCCCATGCCATCt                                                     <  2:136911/150‑1 (MQ=255)                                                                                              aGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTTAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGAAGCCCATGCCATCTAc                                                   >  2:241997/1‑150 (MQ=255)                                                                                              aGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGAAGCCCATGCCATCTAc                                                   >  2:115247/1‑150 (MQ=255)                                                                                              aGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGAAGCCCATGCCATCTAc                                                   >  2:666270/1‑150 (MQ=255)                                                                                                    cACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGAAGCCCATGCCATCTACCTGGAt                                             <  2:735629/150‑1 (MQ=255)                                                                                                     aCGAGCTTGGCATCGGCT‑ACCGCTACGTTAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGAAGCCCATGACATCTACGTggctc                                            >  2:819465/1‑147 (MQ=255)                                                                                                      cGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCAGA‑GACAGGTTCTTTTCGCACCCCCTCCATTCGTAACGACCGCGACACCCGTGGCAGCACCGAAGCCCATGCCATCTACCTGGATGa                                           <  1:743677/150‑1 (MQ=255)                                                                                                       gAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTg                                                                             >  1:89582/1‑115 (MQ=255)                                                                                                       gAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTg                                                                             <  2:89582/115‑1 (MQ=255)                                                                                                        aGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGAAGCCCATGCCATCTACCTGGATGAcc                                         <  1:73894/150‑1 (MQ=255)                                                                                                               cATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGAAGCCCAt                                                            >  2:379635/1‑124 (MQ=255)                                                                                                               cATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGAAGCCCAt                                                            <  1:379635/124‑1 (MQ=255)                                                                                                                 tCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGAAGCCCATGCCATCTACCTGGATGACCGCATCGACa                                <  1:624836/150‑1 (MQ=255)                                                                                                                     cT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAACCGCAACGACCGCGACACCCGTGGCAGCACCGAAGCCCATGCCATCTACCTGGATGACCGCATCGACATCgg                            >  1:336824/1‑150 (MQ=255)                                                                                                                      t‑ACCGCTACGTCAACGACGCCGGCCCCGAACCGCTCTTCCGCGAGCCGGT‑GAACGTCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGAAGCCCATGCCATCTACCTGGATGACCGCATCGACATCGGc                           <  2:94365/150‑1 (MQ=255)                                                                                                                             tACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGAAGCCCATGCCATCTACCTGGATGACCGCATCGACATCgg                            <  2:64173/143‑1 (MQ=255)                                                                                                                             tACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGAAGCCCATGCCATCTACCTGGATGACCGCATCGACATCgg                            >  1:64173/1‑143 (MQ=255)                                                                                                                                 tCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGAAGCCCATGc                                                          <  2:823586/109‑1 (MQ=255)                                                                                                                                 tCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGAAGCCCATGc                                                          >  1:823586/1‑109 (MQ=255)                                                                                                                                     cGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGAAGCCCATGCCATCTACCTGGATGACCGCATCGACATCGGCCGCTGGACCATCAc             >  2:414605/1‑150 (MQ=255)                                                                                                                                         gCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGAAGCCCATGCCATCTACCTGGATGACCGCATCGACATCGGCCGCTGGACCATCACCCCg         >  1:163232/1‑150 (MQ=255)                                                                                                                                          ccGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGAAGCCCATGCCATCTACCTGGATGACCGCATCGACATCGGCCGCTGGACCATCACCCCgg        <  1:414605/150‑1 (MQ=255)                                                                                                                                              ccACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGaa                                                                  <  2:137995/88‑1 (MQ=255)                                                                                                                                              ccACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGaa                                                                  >  1:137995/1‑88 (MQ=255)                                                                                                                                                aCGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGAAGCCCATGCCATCTACCTGGATGACCGCATCGACATCGGCCGCTGGACCATCACCCCGGGCGTgc  <  2:651794/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   CTGGACCAAGGCAGCTTCGTCTCGCTGTCGCCACGCGAGTACTGGGTGCGCGGCATCGAAACCCGCTTCTCGCAGGGCGTGGCCCTGGGTGACAGCTGGCACGAGCTGGGCATCGGCT‑ACCGCTACGTCAACGAAGCCGGCCACGAACTGCGCTTCCGCGAGCCGGT‑GAACGGCAGCCTGCCCACCACCGCCAGCCGCAACGACCGCGACACCCGTGGCAGCACCGAAGCCCATGCCATCTACCTGGATGACCGCATCGACATCGGCCGCTGGACCATCACCCCGGGCGTGC  >  NC_002947/5235921‑5236212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.