New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5421213	52 (1.640)	3 (0.100)	3/228	NT	6.3%	intergenic (‑67/+98)	PP_4760/PP_4761	alcohol dehydrogenase/haloacid dehalogenase‑like family hydrolase
	?	NC_002947	= 5421275	42 (1.440)					intergenic (‑129/+36)	PP_4760/PP_4761	alcohol dehydrogenase/haloacid dehalogenase‑like family hydrolase

GATGGCCTTGCTGCTCATGGGTGGGTCTCCGTATCAGAGCAAAGAATGGGGTTGAGCATAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAGGGGTTGTCCGGCAGGTTCACCAGCACCGTGCGCGCCCCCGCCGC  >  NC_002947/5421129‑5421418                                                                                                                                                   |                                                                                                                                                gATGGCCTTGCTGCTCATGGGTGGGTCTCCGTATCAGAGCAAAGAATGGGGTTGAGCACAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCAtgc                                                                                                                                              <  1:34452‑M2/150‑4 (MQ=255)      ccTTGCTGCTCATGGGTGGGTCTCCGTATCAGAGCAAAGAATGGGGTTGAGCATAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCAtgcccgcg                                                                                                                                         <  1:625697‑M2/150‑9 (MQ=255)       cTTGCTGCTCATGGGTGGGTCTCCGTATCAGAGCAAAGAATGGGGTTGAGCATAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCAtgcccgcga                                                                                                                                        <  1:813822‑M2/150‑10 (MQ=255)       cTTGCTGCTCATGGGTGGGTCTCCGTATCAGAGCAAAGAATGGGGTTGAGCATAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCAtgcccgcga                                                                                                                                        <  2:310215‑M2/150‑10 (MQ=255)            tgctCATGGGTGGGTCTCCGTATCAGAGCAAAGAATGGGGTTGAGCATAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGAGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAgg                                                                                                                                   >  1:135480/1‑150 (MQ=255)                         gtCTCCGTATCAGAGCAAAGAATGGGGTTGAGCATAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCaa                                                                                                                      <  2:229960/150‑1 (MQ=255)                         gtCTCCGTATCAGAGCAAAGAATGGGGTTGAGCATAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCaa                                                                                                                      <  1:379067/150‑1 (MQ=255)                         gtCTCCGTATCAGAGCAAAGAATGGGGTTGAGCATAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAAGCGGACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCaa                                                                                                                      >  1:56726/1‑150 (MQ=255)                            tcCGTATCAGAGCAAAGAATGGGGTTGAGCATAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAacac                                                                                                                   >  1:203030/1‑150 (MQ=255)                                tATCAGAGCAAAGAATGGGGTTGAGCATAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACAcgc                                                                                                               <  2:813822/150‑1 (MQ=255)                                  tCAGAGCAAAGAATGGGGTTGAGCATAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGt                                                                                                             >  1:26264/1‑150 (MQ=255)                                    agagCAAAGAATGGGGTTGAGCATAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCGCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCa                                                                                                                             <  1:239327/132‑1 (MQ=255)                                    agagCAAAGAATGGGGTTGAGCATAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCa                                                                                                                             >  2:239327/1‑132 (MQ=255)                                    agagCAAAGAATGGGGTTGAGCATAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCa                                                                                                           >  2:796585/1‑150 (MQ=255)                                     gagCAAAGAATGGGGTTGAGCATAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGGGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAg                                                                                                          <  2:210248/150‑1 (MQ=255)                                        cAAAGAATGGGGTTGAGCATAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGccc                                                                                                       >  1:357796/1‑150 (MQ=255)                                         aaaGAATGGGGTTGAGCATAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGTGCATGCCCGCGAAGAGGCCCGCACTGCCCACACACGCGTCAGCCCa                                                                                                      >  2:208689/1‑150 (MQ=255)                                                    ttGAGCATAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCAACACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTc                                                                                           >  1:236868/1‑150 (MQ=255)                                                      gAGCATAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCaa                                                                                         <  1:310215/150‑1 (MQ=255)                                                      gAGCATAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCACCACCACCTTccc                                                                                         >  2:265124/1‑148 (MQ=255)                                                           tAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGccc                                                                                    >  2:484992/1‑150 (MQ=255)                                                           tAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGccc                                                                                    >  2:127539/1‑150 (MQ=255)                                                            aGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCg                                                                                   <  1:588597/150‑1 (MQ=255)                                                             gACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCgg                                                                                  <  2:625697/150‑1 (MQ=255)                                                              aCAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCCGCATCACCTTCCACGCCCGGc                                                                                 >  2:32314/1‑150 (MQ=255)                                                                     cGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCACCGCCCGGCAATccgc                                                                          <  2:807064/150‑1 (MQ=255)                                                                      ggCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATccgcc                                                                         <  1:127539/150‑1 (MQ=255)                                                                       gCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGccc                                                                                    <  2:173371/138‑1 (MQ=255)                                                                       gCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGccc                                                                                    >  1:173371/1‑138 (MQ=255)                                                                          cTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCAtgcccgcgaaagggccggatctgtctatgctcaaccccattctttgctctgatacggagacccacccatgagcagc                                                                     <  1:697051‑M2/150‑77 (MQ=255)                                                                          cTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCaa                                                                                                                      >  1:346153/1‑101 (MQ=255)                                                                          cTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCaa                                                                                                                      <  2:346153/101‑1 (MQ=255)                                                                          cTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCAt                                                                     >  2:530944/1‑150 (MQ=255)                                                                            ttCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAACGGGCCAAACGATGAAGAGGCCCGCAGTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGc                                                                   <  1:104780/150‑1 (MQ=255)                                                                                    cACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATccac                                                           <  2:26264/150‑1 (MQ=255)                                                                                            cccccACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTg                                                   <  2:56726/150‑1 (MQ=255)                                                                                                     gggCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCAtgcccgcgaaagggccggatctgtctatgctcaaccccattctttgctctgatacggagacccacccatgagcagcaaggccatctacgtacaacccggcgg                                           >  2:471662‑M2/1‑47 (MQ=255)                                                                                                     gggCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCAtgcccgcgaaagggccggatctgtctatgctcaaccccattctttgctctgatacggagacccacccatgagcagcaaggacatctacgtacaacccggcgg                                           <  1:471662‑M2/149‑103 (MQ=255)                                                                                                      ggCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAGGGGtt                                         >  1:496632/1‑150 (MQ=255)                                                                                                         accacAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAggg                                            <  2:584340/144‑1 (MQ=255)                                                                                                         accacAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAggg                                            >  1:584340/1‑144 (MQ=255)                                                                                                          ccacAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAGGGGTTGTcc                                     <  2:203030/150‑1 (MQ=255)                                                                                                                   ccGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAGGGGTTGTcc                                     >  2:258490/1‑141 (MQ=255)                                                                                                                   ccGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAGGGGTTGTcc                                     <  1:258490/141‑1 (MQ=255)                                                                                                                     gagaCGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAgggg                                           <  1:432270/133‑1 (MQ=255)                                                                                                                     gagaCGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAgggg                                           >  2:432270/1‑133 (MQ=255)                                                                                                                              gcAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAGGGGTTGTCCGGCAGGTTCACCAGCACCGt                 >  2:641210/1‑150 (MQ=255)                                                                                                                                     cTGGGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGAAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAGGGGTTGTCCGGCAGGTTCACCAGCACCGTGCGCGcc          <  2:559908/150‑1 (MQ=255)                                                                                                                                           aaGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAGGGGTTGTCCGGCAGGTTCACCAGCACCGTGCGCGCCCccgcc    <  2:34452/150‑1 (MQ=255)                                                                                                                                             gCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAGGGGTTGTCCGGCAGGTTCACCAGCACCGTGCGCGCCCCcgccgc  >  1:300139/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                GATGGCCTTGCTGCTCATGGGTGGGTCTCCGTATCAGAGCAAAGAATGGGGTTGAGCATAGACAGATCCGGCCCTTTCGCGGGCACGCCCGCCCCCACAGGGGCACCACAGGCCCCGAGACGTGCGCAATACCTGTGGAAGCGGGCATGCCCGCGAAGAGGCCCGCATTGCCAACACACGCGTCAGCCCAGCATCACCTTCAACGCCCGGCAATCCGCCGCATGCCAATCCACCAGCTCTGGCCAGGGGTTGTCCGGCAGGTTCACCAGCACCGTGCGCGCCCCCGCCGC  >  NC_002947/5421129‑5421418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.