New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5506637	34 (1.070)	5 (0.210)	4/190	NT	15.1%	intergenic (+48/‑151)	PP_4839/cycA	iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease
	?	NC_002947	= 5506650	30 (1.240)					intergenic (+61/‑138)	PP_4839/cycA	iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease

TGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAAC  >  NC_002947/5506501‑5506798                                                                                                                                                      |                                                                                                                                                     tGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGtt                                                                                                                                                      <  2:786290/150‑1 (MQ=255)     cacgcTGGTGGGGGTGTCGATGGTGGTCTTTTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACGCGCTCCTACGAGGGACCGCGTTgtag                                                                                                                                                  >  1:816506‑M2/3‑146 (MQ=255)      ccGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTgtagg                                                                                                                                                 <  1:151797‑M2/150‑6 (MQ=255)           ggtggGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTgtaggagcgg                                                                                                                                            >  2:194736‑M2/1‑140 (MQ=255)            gtggGGGTGTCGAGTGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTgtaggagcggg                                                                                                                                           >  1:485917‑M2/1‑139 (MQ=255)                        aTGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCGACGAGGGACCGCGTTgtaggcgcgtgtttacccgcgaa                                                                                                                               >  2:813942‑M2/1‑127 (MQ=255)                          ggtggtGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTgtaggagcgggtttacccgcgaaga                                                                                                                             <  1:1529‑M2/150‑26 (MQ=255)                              gtgATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTgtaggagcgggtttacccgcgaagaggcc                                                                                                                         >  2:5147‑M2/1‑121 (MQ=255)                               tgATGTGGGGGGAGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTACGAGCGGGTTTACCCGCGAAGAAGCCg                                                                                                                        >  2:372792/1‑150 (MQ=255)                                gATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGCTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCgg                                                                                                                       <  1:693627/150‑1 (MQ=255)                                                  tttGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAg                                                                                                     >  1:448457/1‑150 (MQ=255)                                                               cgccgcCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCaga                                                                                        <  2:227305/150‑1 (MQ=255)                                                               cgccgcCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCaga                                                                                        <  2:151797/150‑1 (MQ=255)                                                                          cTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTc                                                                             >  2:347385/1‑150 (MQ=255)                                                                           ttGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTCGGATCCCGGGTTTACCCGCGAAGAGGCCGGTAACGGCGAAAAGTTGAGCCGAAAATGCAGAGTCGATCTGTcg                                                                            >  1:574555/1‑150 (MQ=37)                                                                           ttGGCCAGCGCTTGAGCCTTGCGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGTTCCTACGCGGGAGCGCGTTGTAGAAGCGAATATACCCGCGTAGGGACCGATAGAAGCGAGATGTGGAGCTGAAAATGCAGAGTCGATCtttag                                                                            >  2:95122/1‑146 (MQ=19)                                                                                cAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATc                                                                                 <  2:236142/140‑1 (MQ=255)                                                                                cAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCGCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATc                                                                                 >  1:236142/1‑140 (MQ=255)                                                                                    gcTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGc                                                                                                         >  1:675863/1‑112 (MQ=255)                                                                                    gcTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGc                                                                                                         <  2:675863/112‑1 (MQ=255)                                                                                           ccTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAAc                                                            >  2:417468/1‑150 (MQ=255)                                                                                             ttGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCGGCTGATACGCAGCACGAAGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGGCTATCTGTCGCGCCCCGATCTTGAAcgc                                                          >  2:120898/1‑150 (MQ=37)                                                                                             ttGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCACCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGTCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAAcgc                                                          >  1:355398/1‑150 (MQ=255)                                                                                                tgtTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAAcgcgcg                                                       >  2:705108/1‑150 (MQ=255)                                                                                                  ttGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTc                                                                                     <  2:785878/118‑1 (MQ=255)                                                                                                  ttGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTc                                                                                     >  1:785878/1‑118 (MQ=255)                                                                                                  ttGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCgt                                                      <  1:799998/149‑1 (MQ=255)                                                                                                  ttGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCgt                                                      >  2:799998/1‑149 (MQ=255)                                                                                                          tctttccTCTGAGCGGATAAACCCGTTCCTACGAGGGACCGGTTTGTAGAATCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTtagccta                                             <  1:120898/145‑1 (MQ=255)                                                                                                            tGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTtagcctagc                                           >  2:236016/1‑150 (MQ=255)                                                                                                                ctctTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTtagcctagc                                           >  2:298537/1‑146 (MQ=255)                                                                                                                ctctTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTtagcctagc                                           <  1:298537/146‑1 (MQ=255)                                                                                                                     cgcgGGTAAACCCGCTCGTGCGAGGGCCCGCGTTGTAGGGGCGGGTTTACCCGAGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACct                                  <  2:44229/150‑1 (MQ=255)                                                                                                                        gggTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTg                               >  2:851059/1‑150 (MQ=255)                                                                                                                             aaCCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACaag                          <  2:142221/150‑1 (MQ=255)                                                                                                                               cccGCTCGTACGAGGGACGGCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCAAGCCGGCTACCTCTGACaagaa                        <  2:440693/150‑1 (MQ=255)                                                                                                                               cccGCTCCTACGAGGGACCGCGTTgtaggagcgggtttacccgcgaagaggccagcacaggcaacacaaggctcaagcgctggccaagacccggcggcgcctcaccac                                                                  >  1:293680‑M2/1‑24 (MQ=255)                                                                                                                               cccGCTCCTACGAGGGACCGCGTTgtaggagcgggtttacccgcgaagaggccagcacaggcaacacaaggctcaagcgctggccaagacccggcggcgcctcaccac                                                                  <  2:293680‑M2/108‑85 (MQ=255)                                                                                                                                ccGCTCCTACGAGGGACCGCGTTgtaggagcgggtttacccgcgaagaggccggtacaggcaacacaaggctcaagcgctggccaagacccggcggcgcctcaccaccaaactatccacccccaacatcaccaccatagacacacccacc                       <  1:87000‑M2/150‑128 (MQ=255)                                                                                                                                ccGCTCCTACGAGGGACCGCGTTgtaggagcgggtttacccgcgaagaggccagcacaggcaacacaaggctcaagcgct                                                                                             <  2:84556‑M2/80‑58 (MQ=255)                                                                                                                                ccGCTCCTACGAGGGACCGCGTTgtaggagcgggtttacccgcgaagaggccagcacaggcaacacaaggctcaagcgct                                                                                             >  1:84556‑M2/1‑23 (MQ=255)                                                                                                                                  gCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGAc                     <  1:417468/150‑1 (MQ=255)                                                                                                                                      cTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCa                 <  2:1529/150‑1 (MQ=255)                                                                                                                                              gACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGa         <  1:347385/150‑1 (MQ=255)                                                                                                                                               aCCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGAc        <  2:574555/150‑1 (MQ=255)                                                                                                                                                     ttGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTANCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAAc  <  1:95122/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     TGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCGCCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACGCAAAC  >  NC_002947/5506501‑5506798

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.