| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5877975 | 21 (0.660) | 4 (0.130) | 4/236 | NT | 16.3% | coding (67/903 nt) | PP_5151 | hypothetical protein |
| ? | NC_002947 | = 5878001 | 21 (0.700) | coding (41/903 nt) | PP_5151 | hypothetical protein | |||||
TCCAGCACCACCCGGTAGCGATCCAGGCCAATGCTGCGCTCCACAGGCTGCCACCAGGTCTTGAGATTGAACCAGCCACGCTCGAACAGGCGAAACTCCTGCCCGGCCCAGCCAAGCAGCAGCAGAGCAAGGGCAGCCAGAACAAGGAACAGGCGAACAAAACGACGCATAGGGACAGACTCGACACAAGGATGGCGAATCTAATCATGAATGGCTGAAGCAAAGCTTAATGCAAGCGTCAGGCAATTCTGATGATGTTGTCAGTTCTTTT > NC_002947/5877872‑5878142 | tCCAGCACCACCCGGTAGCGATCCAGGCCAATGCTGCGCTCCACAGGCTGCCACCAGGTCTTGAGATTGAACCAGCCACGCTCGAACAGGCGAAACTCCTGCCCGGCCCAGCCAAGCAGCAGCAGAGCAAGGGCAGCCAGAACAAGGAAc > 2:769697/1‑150 (MQ=255) caccCGGTAGCGATCCAGGCCAATGCTGCGCTCCACAGGCTGCCACCAGGTCTTGAGATTGAACCAGCCACGCTCGAACAGGCGAAACTCCTGCCCGGCCCAGCCAAGCAGCAGCAGAGCAAGGGCAGCCAGAACAAGGAACAGGCGAAc > 2:747991/1‑150 (MQ=255) aTCCAGGCCAATGCTGCACTCCACAGGCTGGCACCAGGTCTTGAGATTGAACCAGCCACGCTCGAACAGGCGAAACTCCTGCCCGGCCCAGCCAAGCAGCAGCAGAGCAAGGGCAGCCAGAACAAGGAACAGGCGAACAAAACGACGCAt > 1:130672/1‑150 (MQ=255) tCCAGGCCAATGCTGCGCTCCACAGGCTGCCACCAGGTCTTGAGATTGAACCAGCCACGCTCGAACAGGCGAAACTCCTGCCCGGCCCAGCCAAGCAGCAGCAGAGCAAGGGCAGCCAGAACAAGGAACAGGCGAACAAAACGACGCATa > 2:667078/1‑150 (MQ=255) ccAGGCCAATGCTGCGCTCCACAGGCTGCCACCAGGTCTTGAGATTGAACCAGCCACGCTCGAACAGGCGAAACTCCTGCCCGGCCCAGCCAAGCAGCAGCAGAGCAAGGGCAGCCAGAACAAGGAACAGGCGAACAAAACGACGCATAg < 2:500713/150‑1 (MQ=255) tgcGCTCCACAGGCTGCCACCAGGTCTTGAGATTGAACCAGCCACGCTCGAACAGGCGAAACTCCTGCCCGGCCCAGCCAAGCAGCAGCAGAGCAAGGGCAGCCAGAACAAGGAACAGGCGAACAAAACGACGCATAGGGACAGACTCGa < 1:769697/150‑1 (MQ=255) cacaGGCTGCCACCAGGTCTTGAGATTGAACCAGCCACGCTCGAACAGGCGAAACTCCTGCCCGGCCCAGCCAAGCAGCAGCAGAGCAAGGGCAGCCAGAACAAGGAACAGGCGAACAAAACGACGCATAGGGACAGACTCGACACAAgg < 2:260799/150‑1 (MQ=255) caGGCTGCCACCAGGTCTTGAGATTGAACCAGCCACGCTCGAACAGGCCAAACTCCTGCCCGGCCCAGCCAAGCAGCAGCAGAGCAAGGGCAGCCAGAACAAGGAACAGGCGAACAAAACGACGCATAGGGACAGACTCGACACAAGGAt < 2:428592/150‑1 (MQ=255) caGGTCTTGAGATTGAACCAGCCACGCTCGAACAGGCGAAACTCCTGCCCGGCCCAGCCAAGCAGCAGCAGAGCAAGGGCAGCCAGAACAAGGAACAGGCGAACAAAACGACGCATAGGGACAGACTCGACACAAGGATGGCGAAACTaa > 2:382922/1‑150 (MQ=255) tCTTGAGATTGAACCAGCCACGCTCGAACAGGCGAAACTCCTGCCCGGCCCAGCCAAGCAGCAGCAGAGCAAGGGCAGCCAGAACAAGGAACAGGCGAACAAAACGACGCATAGGGACAGACTCGACACAAGGATGGCGAATCTAATCAt > 2:631023/1‑150 (MQ=255) gcTTGAGAGTGAACCAGCCACGCTCGAACAGGCGAAACTCCTGCCCGGCCCAGCCAAGCAGCAGCAGAGCAAGGGCAGCCAGAACAAGGAACAGGCGAACAAAACGACGCATAGGGACAGACTCGACTCAAGGATGGCGAATCTAATCAt < 2:130672/149‑1 (MQ=255) gCTCGAACAGGCGAAACTCCTGCCCGGCCCAGCCAAGCAGCAGCAGAGCAAGGGCAGCCAGAACAAGGAACAGGCGAACAAAACGACGCATAGGGACAGACTCGACACAAGGATGGCGAATCTAATCATGAATGGCTGAAGCAAAGCTTa > 1:436114/1‑150 (MQ=255) ggCGAAACTCCTGCCCGGCCCAGCCAAGCAGCAGCAGAGCAAGGGCAGCCAGAACAAGGAACAGGCGAACAAAACGACGCATAGGGACAGACTCGACACAAGGATGGCGAATCTAATCATGAATGGCTGAAGCAAAGCTTAATGCAAGCg > 1:156193/1‑150 (MQ=255) gCGAAACTCCTGCCCGGCCCAGCCAAGCAGCAGCAGAGCAAAGGCAGCCAGAACAAGGAACAGGCGAACAAAACGACGCATAGGGACAGACTCGACACAAGGATGGCGAATCTAATCATGAATGGCTGAAGCAAAGCTTAATGCAAGCGt > 2:852499/1‑150 (MQ=255) cTCCTGCCCGGCCCAGCCAAGCAGCAGCAGAGCAAGGGCAGCCAGAACAAGGAACAGGCGAACAAAACGACGCATAGGGa > 1:763989/1‑80 (MQ=255) cTCCTGCCCGGCCCAGCCAAGCAGCAGCAGAGCAAGGGCAGCCAGAACAAGGAACAGGCGAACAAAACGACGCATAGGGa < 2:763989/80‑1 (MQ=255) ccTGCCCGGCCCAGCCAAGCAGCAGCAGAGCAAgggcaggagtttcgcctgttcgagcgtggctggttcaatctcaagacctggtggcagcctgtggagcgca < 1:802008‑M2/103‑71 (MQ=255) ccTGCCCGGCCCAGCCAAGCAGCAGCAGAGCAAgggcaggagtttcgcctgttcgagcgtggctggttcaatctcaagacctggtggcagcctgtggagcgca > 2:802008‑M2/1‑33 (MQ=255) tGCCCGGCCCAGCCAAGCAGCAGCAGAGCAAGGGCAGCCAGAACAAGGAACAGGCGAACAAAACGACGCATAGGGACAGACTCGACACAAGGATGGCGAATCTAATCATGAATGGCTGAAGCAAAGCTTAATg < 2:556132/133‑1 (MQ=255) tGCCCGGCCCAGCCAAGCAGCAGCAGAGCAAGGGCAGCCAGAACAAGGAACAGGCGAACAAAACGACGCATAGGGACAGACTCGACACAAGGATGGCGAATCTAATCATGAATGGCTGAAGCAAAGCTTAATg > 1:556132/1‑133 (MQ=255) gCCCGGCCCAGCCAAGCAGCAGCAGAGCAAgggcaggagtttcgcctgttcgagcgtggctggttcaatctcaagacctggtggcagcctgtggagcgcagcattggcctggatcgctaccgggtggtgctggaggcgcaaccgatcgaa < 2:331552‑M2/150‑121 (MQ=255) cAAGCAGCAGCAGAGCAAgggcaggagtttcgcctgttcgagcgtggctggttcaatctcaagacctggtggcagcctgtggagcgcagcattggcctggatcgctaccgggtggtgctggaggggcaaccgatcgaagggctggatgat > 1:331552‑M2/1‑18 (MQ=255) aaGCAGCAGCAGAGCAAGGGCAGCCAGAACAAGGAACAGGCGAACAAAACGACGCATAGGGACAGACTCGACACAAGGATGGCGAATCTAATCATGAATGGCTGAAGCAAAGCTTAATGCAAGCGTCAGGCAATTCTGATGATGTTGTCa < 2:436114/150‑1 (MQ=255) gcagAGCAAGGGCAGCCAGAACAAGGAACAGGCGAACAAAACGACGCATAGGGACAGACTCGACACAAGGATGGCGAATCTAATCATGAATGGCTGAAGCAAAGCTTAATGCAAGCGTCAGGCAATTCTGATGATGTTTTCAGTTCtttt > 2:356711/1‑150 (MQ=255) gcagAGCAAGGGCAGCCAGAACAAGGAACAGGCGAACAAAACGACGCATAGGGACAGACTCGACACAAGGATGGCGAATCTAATCATGAATGGCTGAAGCAAAGCTTAATGCAAGCGTCAGGCAATTCTGATGATGTTGTCAGTTCtttt < 1:747991/150‑1 (MQ=255) | TCCAGCACCACCCGGTAGCGATCCAGGCCAATGCTGCGCTCCACAGGCTGCCACCAGGTCTTGAGATTGAACCAGCCACGCTCGAACAGGCGAAACTCCTGCCCGGCCCAGCCAAGCAGCAGCAGAGCAAGGGCAGCCAGAACAAGGAACAGGCGAACAAAACGACGCATAGGGACAGACTCGACACAAGGATGGCGAATCTAATCATGAATGGCTGAAGCAAAGCTTAATGCAAGCGTCAGGCAATTCTGATGATGTTGTCAGTTCTTTT > NC_002947/5877872‑5878142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |