| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2974787 | 5 (0.380) | 4 (0.320) | 4/260 | 1.1 | 40.5% | coding (677/777 nt) | PP_2601 | IclR family transcriptional regulator |
| ? | NC_002947 | = 2974812 | 7 (0.570) | coding (702/777 nt) | PP_2601 | IclR family transcriptional regulator | |||||
CCTACCTGCACCGCGCCCGCGAGCGTGGTTATGCCTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTT > NC_002947/2974646‑2974930 | ccTACCTGCACCGCGCCCTCGAGCGTGGTTATGCCTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTgg < 1:43803/150‑1 (MQ=255) tACCTGCACCGCGCCCGCGAGCGTGGTTATGCCTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGca > 2:8902/1‑150 (MQ=255) gCACCGCGCCCGCGAGCGTGGTTATGCCTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCCAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCtgcgaggcggctctg > 2:199181‑M1/1‑135 (MQ=255) gTGGTTATGCCTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCGCAgcgctgg > 1:39442‑M2/1‑143 (MQ=255) aTGCCTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCtgcgaggcggctctgtgccagccgcgcgctgggcccgg < 1:199181‑M1/150‑39 (MQ=255) ggAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCtgcgaggcggctctgtgccagccgcgcgctgggcccggcgatgctc > 1:272827‑M1/1‑99 (MQ=255) ggAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCtgcgaggcggctctgtgccagccgcgcgctgggcccggcgatgctc < 2:272827‑M1/145‑47 (MQ=255) tGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGACGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCg > 2:170672/1‑150 (MQ=255) gAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCg < 2:26571/150‑1 (MQ=255) aTTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGAt < 1:117509/150‑1 (MQ=255) gAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCGCAgcgctgggcccggcgatgctcagcacgccaatcacctcgtcactttgcgggcggcgcaccactgcggccagggctgaggtgccgatggcggaggtttcc > 1:272827‑M2/1‑46 (MQ=255) gAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCGCAgcgctgggcccggcgatgctcagcacgccaatcacctcgtcactttgcgggcggcgcaccactgcggccagggctgaggtgccgatggcggaggtttcc < 2:272827‑M2/145‑100 (MQ=255) ccGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCGCAgcgctgggcccggcgatgctcagcacgccaatcacctcgtcactttgcgggcggcgcaccactgcggccagggctgaggtgccgatggcggaggtttcctcgacccaggcat < 1:199181‑M2/150‑113 (MQ=255) ccAGCGCtgcgaggcggctctgtgccagccgcgcgctgggcccggcgatgctcagcacgccaatcacctcgtcactttgcgggcggcgcaccactgcggccagggctgaggtgccgatggcggaggtttcctcgacccaggcataaccac > 1:39442‑M1/1‑7 (MQ=255) | CCTACCTGCACCGCGCCCGCGAGCGTGGTTATGCCTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTT > NC_002947/2974646‑2974930 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |