New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2974787	5 (0.380)	4 (0.320)	4/260	1.1	40.5%	coding (677/777 nt)	PP_2601	IclR family transcriptional regulator
	?	NC_002947	= 2974812	7 (0.570)					coding (702/777 nt)	PP_2601	IclR family transcriptional regulator

GTGGTTATGCCTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAAC  >  NC_002947/2974670‑2974947                                                                                                                                               |                                                                                                                                        gTGGTTATGCCTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCGCAgcgctgg                                                                                                                                  >  1:39442‑M2/1‑143 (MQ=255)                                                 tGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGACGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCg                                                                                  >  2:170672/1‑150 (MQ=255)                                                                                 gAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCg                                                  <  2:26571/150‑1 (MQ=255)                                                                                       aTTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGAt                                            <  1:117509/150‑1 (MQ=255)                                                                                                  gAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCGCAgcgctgggcccggcgatgctcagcacgccaatcacctcgtcactttgcgggcggcgcaccactgcggccagggctgaggtgccgatggcggaggtttcc                                      >  1:272827‑M2/1‑46 (MQ=255)                                                                                                  gAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCGCAgcgctgggcccggcgatgctcagcacgccaatcacctcgtcactttgcgggcggcgcaccactgcggccagggctgaggtgccgatggcggaggtttcc                                      <  2:272827‑M2/145‑100 (MQ=255)                                                                                                          ccGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCGCAgcgctgggcccggcgatgctcagcacgccaatcacctcgtcactttgcgggcggcgcaccactgcggccagggctgaggtgccgatggcggaggtttcctcgacccaggcat                         <  1:199181‑M2/150‑113 (MQ=255)                                                                                                                          gCTGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGaaaa         <  1:170672/150‑1 (MQ=255)                                                                                                                               cacaGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGATGa    >  1:26518/1‑150 (MQ=255)                                                                                                                                acaGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCAAGCTGTTTGCCTGAg                                                             <  1:270264/92‑1 (MQ=255)                                                                                                                                acaGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCAAGCTGTTTGCCTGAg                                                             >  2:270264/1‑92 (MQ=255)                                                                                                                                 caGAGCCGCCTCGCAgcgctgggcccggcgatgctcagcacgccaatcacctcgtcacttggcgggcggcgcaccactgcggccagggctgaggtgccgatggcggaggtttcctcgacccaggcataaccacgctcgcgggcgcggtgc  >  2:199181‑M2/1‑15 (MQ=255)                                                                                                                                               |                                                                                                                                        GTGGTTATGCCTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAAC  >  NC_002947/2974670‑2974947

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.